Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008038.1 Corchorus capsularis cultivar CVL-1 contig08059, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75044

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6872--7227
103
3.4
103
89
1
480
36
11
9
41
1.74
12564--12600
16
2.3
16
90
0
56
2
8
72
16
1.19
33076--33132
30
1.9
30
85
7
80
35
19
7
38
1.79
35771--35808
21
1.9
21
89
10
62
28
0
0
71
0.87
46776--47487
167
4.3
161
84
5
789
30
13
16
39
1.87
46932--47487
167
3.3
165
86
2
799
31
13
16
39
1.87
47966--47997
2
16.0
2
93
0
55
46
0
3
50
1.17
48240--48270
16
1.9
16
93
0
53
35
9
0
54
1.33
48611--49282
200
3.4
199
86
3
902
34
17
13
34
1.90
51787--51960
35
5.0
34
81
2
195
41
8
16
32
1.79
51780--51960
69
2.6
69
84
5
204
42
8
16
32
1.78
51879--51937
27
2.3
25
76
5
64
44
3
18
33
1.67
51965--52086
51
2.4
51
83
2
138
49
5
16
28
1.68
52100--52179
40
2.0
40
100
0
160
35
2
27
35
1.71
52211--52378
52
3.1
52
78
15
180
50
5
17
25
1.69
52225--52409
57
3.4
55
82
5
214
46
7
18
27
1.76
52201--52432
109
2.2
106
76
9
236
47
6
18
28
1.71
57415--57457
3
13.7
3
90
9
68
34
0
0
65
0.93
58422--58592
81
2.1
79
92
2
288
20
22
24
32
1.98
58425--58613
81
2.4
81
88
2
258
21
21
22
33
1.97
66791--66841
26
2.0
26
88
7
77
66
9
5
17
1.40
69068--69104
18
2.0
19
89
5
58
37
10
5
45
1.62

Tables:   1

The End!