Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000804.1 Corchorus capsularis cultivar CVL-1 contig00804, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3540
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:22 original size:2 final size:2

Alignment explanation


    Indices: 15--65  Score: 102
    Period size: 2  Copynumber: 25.5  Consensus size: 2

          5 TTCTTCTTCT

                                                                          
         15 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                         
         57 TC TC TC TC T
          1 TC TC TC TC T

         66 ATCAATTACT


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   49  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (2 bp):   
TC

Done.