Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008048.1 Corchorus capsularis cultivar CVL-1 contig08069, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88399

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1276--1312
15
2.3
17
81
13
51
59
16
16
8
1.59
9988--10021
11
3.1
11
91
0
50
85
0
11
2
0.71
9987--10031
19
2.4
19
88
3
65
80
0
17
2
0.82
9994--10027
11
3.0
11
91
4
50
82
0
17
0
0.67
10037--10099
19
3.7
19
72
27
77
38
9
17
34
1.82
10040--10099
31
1.9
31
100
0
120
38
10
16
35
1.82
10544--10596
27
2.0
27
84
0
70
66
0
18
15
1.26
10904--10939
16
2.1
17
90
10
56
83
0
16
0
0.65
10898--10945
22
2.1
23
88
11
73
83
0
16
0
0.65
10899--10944
5
9.8
5
82
17
55
82
0
17
0
0.67
12062--12169
36
3.0
36
79
2
137
16
13
27
41
1.87
12049--12155
35
3.0
35
79
2
133
14
14
26
44
1.83
12149--12571
71
6.0
70
87
2
605
22
19
21
36
1.95
12149--12571
141
3.0
140
89
1
630
22
19
21
36
1.95
21867--21910
17
2.6
17
85
0
61
29
9
18
43
1.80
23404--23440
19
1.9
19
88
0
56
45
13
13
27
1.81
25323--25347
12
2.1
12
100
0
50
24
16
28
32
1.96
25349--25453
39
2.7
39
100
0
210
27
12
28
31
1.93
41664--41706
20
2.2
20
100
0
86
48
0
13
37
1.43
42178--42248
35
2.0
35
89
5
108
39
14
19
26
1.90
42588--42613
13
2.0
13
100
0
52
46
0
0
53
1.00
42613--42687
36
1.9
39
84
12
102
45
0
10
44
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42864--42936
36
2.0
36
100
0
146
42
13
16
27
1.86
43248--43326
31
2.5
31
83
0
104
32
24
27
15
1.95
43299--43410
31
3.8
30
73
15
92
36
26
22
14
1.92
48235--48313
32
2.5
33
84
12
103
32
11
29
26
1.91
51507--51532
12
2.2
12
100
0
52
84
0
0
15
0.62
51824--52113
148
2.0
148
100
0
580
37
18
13
30
1.90
60033--60059
2
13.5
2
100
0
54
48
0
0
51
1.00
61525--61577
9
5.3
11
90
9
55
67
0
0
32
0.91
61543--61578
3
12.0
3
100
0
72
66
0
0
33
0.92
64501--64538
15
2.5
15
87
8
51
15
13
7
63
1.51
68987--69035
24
2.0
25
84
4
64
34
28
0
36
1.58
70830--70889
32
2.0
29
90
9
93
21
30
26
21
1.99
80779--80963
93
2.0
92
98
1
361
35
15
9
40
1.80
80963--81015
17
3.2
17
71
28
60
22
5
26
45
1.74
80969--81024
14
3.7
14
78
17
67
21
7
19
51
1.70
80954--81029
32
2.4
32
97
0
143
25
6
22
46
1.76
80954--81033
16
5.0
16
74
20
69
23
6
22
47
1.74
81576--81613
19
2.0
19
100
0
76
31
5
10
52
1.58
82217--82273
24
2.4
24
93
0
96
36
36
17
8
1.81
82321--82362
16
2.6
16
96
0
75
38
40
14
7
1.73
82321--82378
16
3.7
15
84
9
62
36
43
15
5
1.69
83153--83226
15
4.8
16
86
6
107
40
39
13
6
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83153--83226
31
2.4
31
93
0
121
40
39
13
6
1.71
83216--83256
16
2.6
16
85
11
57
24
48
19
7
1.74
83378--83462
41
2.1
41
100
0
170
20
21
16
42
1.89

Tables:   1

The End!