Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008049.1 Corchorus capsularis cultivar CVL-1 contig08070, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12108
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Found at i:9838 original size:16 final size:15

Alignment explanation


    Indices: 9796--9843  Score: 53
    Period size: 16  Copynumber: 3.1  Consensus size: 15

       9786 CTCCATTTAC

                *           
       9796 TTTTTCTTTGCATTG-
          1 TTTTGCTTTG-ATTGA

                   *       
       9811 TTTTGCTGTGATTGA
          1 TTTTGCTTTGATTGA

                            
       9826 TTATTGCTTTGATTGA
          1 TT-TTGCTTTGATTGA

              
       9842 TT
          1 TT

       9844 GCCTATTCCT


Statistics
Matches: 28,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  14    4  0.14
  15   10  0.36
  16   14  0.50

ACGTcount: A:0.12, C:0.08, G:0.19, T:0.60


Consensus pattern (15 bp):   
TTTTGCTTTGATTGA

Found at i:11550 original size:11 final size:11

Alignment explanation


    Indices: 11534--11563  Score: 51
    Period size: 11  Copynumber: 2.7  Consensus size: 11

      11524 GAAGTTCGTG

                     * 
      11534 TTTGAAGATTA
          1 TTTGAAGATAA

                       
      11545 TTTGAAGATAA
          1 TTTGAAGATAA

                    
      11556 TTTGAAGA
          1 TTTGAAGA

      11564 ATCGAAGACC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   18  1.00

ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40


Consensus pattern (11 bp):   
TTTGAAGATAA
Done.