Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008050.1 Corchorus capsularis cultivar CVL-1 contig08071, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3788
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:1601 original size:12 final size:13

Alignment explanation


    Indices: 1576--1609  Score: 52
    Period size: 12  Copynumber: 2.7  Consensus size: 13

       1566 ATAATTATTG

                         
       1576 TTTGCTTTATTAA
          1 TTTGCTTTATTAA

                         
       1589 TTTGCTTTA-TAA
          1 TTTGCTTTATTAA

             *       
       1601 TCTGCTTTA
          1 TTTGCTTTA

       1610 GATTTAGATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  12   11  0.55
  13    9  0.45

ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59


Consensus pattern (13 bp):   
TTTGCTTTATTAA
Done.