genome.fa.s8053.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008053.1 Corchorus capsularis cultivar CVL-1 contig08074, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21869

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1649--1689	21	2.0	21	95	0	73	19	26	34	19	1.96
1670--1775	33	3.2	33	81	5	117	19	40	29	10	1.85
1750--1812	33	1.9	33	90	6	101	22	42	25	9	1.83
4424--4466	12	3.5	12	93	6	77	34	16	23	25	1.95
5536--5571	3	12.3	3	94	5	65	33	36	0	30	1.58
6163--6198	10	3.6	10	96	0	63	30	5	22	41	1.76
6309--6347	12	3.6	12	74	25	50	30	15	28	25	1.96
12514--12538	13	1.9	13	100	0	50	16	36	0	48	1.46
14086--14123	18	2.1	19	85	9	53	71	13	15	0	1.16
15371--15443	30	2.4	30	86	11	96	13	24	4	57	1.54
15404--15466	14	4.4	14	78	6	63	14	25	1	58	1.45
15395--15446	15	3.5	15	78	7	61	15	25	3	55	1.57
15395--15460	29	2.2	30	89	2	98	15	25	3	56	1.54
15415--15565	36	4.3	36	79	9	177	15	24	3	56	1.56
15516--15556	22	1.9	21	85	5	55	17	24	2	56	1.53
15537--15568	14	2.2	15	94	5	57	15	18	0	65	1.27
15740--15855	37	3.2	37	69	9	112	27	20	6	44	1.77
15687--15923	72	3.3	71	88	3	341	27	18	6	47	1.74
15795--16105	126	2.5	126	92	0	523	27	18	7	46	1.74
15857--15967	55	2.0	55	94	0	195	27	18	7	45	1.76
15909--16020	34	3.2	34	70	16	93	29	16	7	46	1.74
15981--16106	55	2.3	55	90	1	189	27	16	7	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16912--17066	69	2.3	69	96	3	289	37	10	3	48	1.55
21472--21512	21	2.0	21	85	0	55	41	2	12	43	1.55
21535--21628	49	1.9	49	84	4	127	40	5	14	39	1.69
21442--21680	51	4.7	50	75	8	153	38	3	15	41	1.64

Tables:   1

The End!