Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008057.1 Corchorus capsularis cultivar CVL-1 contig08078, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22688
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:13477 original size:12 final size:12

Alignment explanation


    Indices: 13460--13485  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

      13450 TTTCTTGTTG

                        
      13460 ATTGTTTGAAAT
          1 ATTGTTTGAAAT

                        
      13472 ATTGTTTGAAAT
          1 ATTGTTTGAAAT

              
      13484 AT
          1 AT

      13486 ATATTTACTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50


Consensus pattern (12 bp):   
ATTGTTTGAAAT
Done.