genome.fa.s8059.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008059.1 Corchorus capsularis cultivar CVL-1 contig08080, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81047

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1377	322	4.3	322	80	7	1520	32	17	14	34	1.91
1--1377	634	2.2	631	91	2	2246	32	17	14	34	1.91
1384--1409	12	2.2	12	100	0	52	50	0	7	42	1.31
2171--2214	22	2.0	22	100	0	88	36	18	9	36	1.82
3189--3273	20	4.4	20	69	18	63	29	24	7	38	1.82
3206--3469	32	8.1	32	93	1	429	33	24	9	32	1.88
3447--3506	20	2.9	21	70	5	59	31	28	6	33	1.83
3434--3495	20	3.0	20	67	4	61	32	29	9	29	1.89
3441--3508	21	3.3	21	70	4	75	30	26	8	33	1.87
4209--4806	297	2.0	297	100	0	1196	40	18	19	21	1.92
8724--8750	14	1.9	14	100	0	54	81	0	0	18	0.69
8651--9074	211	2.0	213	88	4	642	37	17	17	26	1.92
9223--9331	30	3.6	30	97	0	200	21	14	23	40	1.90
10150--10403	51	5.0	51	75	6	205	19	33	12	35	1.89
16473--16502	15	2.0	15	100	0	60	33	13	20	33	1.91
19727--19760	16	2.1	16	88	0	50	17	38	0	44	1.49
34151--34219	24	2.9	24	80	0	84	43	26	5	24	1.76
35826--35926	31	3.3	29	80	8	87	21	17	20	39	1.92
35826--35894	29	2.3	30	85	5	86	17	20	18	43	1.88
36218--36256	20	2.0	20	100	0	78	17	10	35	35	1.84
37388--37438	17	3.1	16	80	8	57	35	21	23	19	1.96
42511--42646	30	4.7	29	83	9	179	39	16	25	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42511--42646	58	2.3	59	96	2	256	39	16	25	18	1.91
47920--47961	22	1.9	22	85	0	57	42	21	16	19	1.89
50111--50145	6	5.8	6	96	0	52	8	34	5	51	1.56
62794--62854	31	2.0	31	100	0	122	45	27	0	26	1.54
63223--63300	25	3.2	25	62	17	63	41	8	11	38	1.73
63223--63324	49	2.1	49	100	0	204	43	9	11	35	1.75
63248--63326	24	3.2	24	63	16	63	46	10	11	31	1.73
63264--63411	73	2.0	73	98	0	287	41	6	18	34	1.75
68439--68733	109	2.7	109	88	5	423	36	10	2	50	1.50
68639--68684	17	2.7	18	80	6	51	39	10	0	50	1.38
80913--81042	31	4.2	31	84	3	136	19	22	26	32	1.97

Tables:   1

The End!