Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008063.1 Corchorus capsularis cultivar CVL-1 contig08084, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136635

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
341--495
70
2.2
70
89
2
231
50
0
12
36
1.45
3226--3264
2
20.0
2
84
5
53
43
0
0
56
0.99
5975--6000
9
2.9
9
100
0
52
11
30
23
34
1.90
11745--11791
15
3.5
15
67
27
50
29
17
21
31
1.96
11739--11794
25
2.2
25
96
0
103
28
14
25
32
1.94
11854--11963
51
2.2
51
88
3
159
30
20
20
29
1.98
14316--14353
18
2.1
18
85
9
51
63
13
0
23
1.30
33508--33677
83
2.0
83
97
0
322
29
14
19
36
1.92
42660--42713
27
2.0
27
100
0
108
37
7
22
33
1.82
45491--45535
23
2.0
22
86
4
63
55
4
11
28
1.54
45974--46009
19
1.9
18
88
5
54
30
2
16
50
1.60
48650--48679
2
15.0
2
100
0
60
50
0
0
50
1.00
50902--50928
2
13.5
2
100
0
54
48
0
0
51
1.00
51664--51692
14
2.0
15
93
6
51
41
3
6
48
1.47
71405--72165
322
2.4
321
96
0
1380
22
21
32
23
1.98
75348--75476
64
2.0
64
98
0
249
47
7
17
27
1.75
95003--95056
27
2.0
27
100
0
108
18
29
18
33
1.95
110418--110478
16
4.1
15
74
19
56
29
34
6
29
1.83
110422--110483
30
2.1
30
96
0
115
29
30
6
33
1.83
112852--112876
10
2.5
10
100
0
50
12
0
0
88
0.53
116077--116116
21
1.9
21
100
0
80
47
15
7
30
1.72
116488--116601
57
2.0
57
100
0
228
49
14
12
24
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116762--116787
12
2.2
12
100
0
52
61
23
7
7
1.49
127155--127189
16
2.2
16
100
0
70
45
17
20
17
1.85
136151--136180
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!