Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008064.1 Corchorus capsularis cultivar CVL-1 contig08085, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80349

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63--125
33
1.9
33
93
0
108
22
14
14
49
1.79
259--320
32
1.9
32
93
0
106
22
12
14
50
1.77
1--358
196
1.8
196
93
3
621
22
14
13
48
1.80
2142--2304
78
2.1
78
96
0
299
47
0
14
37
1.45
2237--2364
62
2.1
62
87
0
184
48
0
11
39
1.45
4441--4479
1
39.0
1
100
0
78
100
0
0
0
0.00
9899--9923
2
12.5
2
100
0
50
52
0
0
48
1.00
10030--10082
26
2.0
26
92
0
88
35
28
15
20
1.93
12216--12280
26
2.5
26
80
14
71
60
1
0
38
1.07
24486--24797
156
2.0
156
88
3
459
33
19
19
26
1.96
36740--36794
17
3.2
17
87
10
76
20
21
21
36
1.95
39217--39246
3
10.0
3
100
0
60
0
33
66
0
0.92
46361--46715
177
2.0
177
100
0
710
24
24
16
34
1.96
47335--47664
166
2.0
166
85
1
446
38
17
14
28
1.90
47718--47807
45
2.0
45
91
4
146
27
21
16
34
1.95
51229--51258
2
15.0
2
100
0
60
50
0
0
50
1.00
53698--53794
33
2.9
33
89
0
140
10
29
42
17
1.82
71550--71574
12
2.1
12
100
0
50
48
8
20
24
1.76
76422--76449
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!