Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008065.1 Corchorus capsularis cultivar CVL-1 contig08086, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40320

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--38
2
19.0
2
100
0
76
50
0
0
50
1.00
5248--5275
2
14.0
2
100
0
56
50
0
0
50
1.00
8282--8321
3
13.3
3
100
0
80
32
0
0
67
0.91
17942--17987
20
2.2
21
88
3
67
39
34
2
23
1.67
19062--19086
1
25.0
1
100
0
50
100
0
0
0
0.00
19543--19581
20
2.0
20
94
0
69
23
30
25
20
1.98
23826--23889
29
2.2
29
86
5
85
28
10
14
46
1.77
24468--24555
32
2.8
32
87
3
133
21
26
28
23
1.99
24594--24664
29
2.4
30
76
2
81
46
12
19
21
1.83
26257--26327
29
2.3
31
83
11
85
26
25
15
32
1.95
34566--34591
3
8.7
3
100
0
52
0
34
0
65
0.93
36185--36239
26
2.0
29
82
13
71
27
18
12
41
1.86
39987--40206
32
6.9
32
98
1
415
30
9
25
34
1.88

Tables:   1

The End!