Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008069.1 Corchorus capsularis cultivar CVL-1 contig08090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89283

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6707--6736
12
2.5
12
94
0
51
33
6
6
53
1.53
23369--23405
18
2.1
18
89
0
56
5
10
40
43
1.63
23569--23619
22
2.3
22
74
16
52
45
1
5
47
1.38
45325--45351
8
3.4
8
100
0
54
88
11
0
0
0.50
52310--52786
124
3.8
124
96
1
837
18
18
18
44
1.87
67713--67759
14
3.3
14
85
5
67
31
4
42
21
1.72
68972--69124
60
2.5
60
84
2
191
33
15
18
32
1.92
70629--70669
20
2.0
20
90
0
64
46
0
0
53
1.00
71912--71940
14
2.1
14
100
0
58
27
17
13
41
1.87
75983--76011
6
4.8
6
100
0
58
13
0
0
86
0.58
79891--79951
29
2.1
29
84
6
79
44
13
21
21
1.86
82864--82922
29
2.0
29
96
0
109
28
18
11
40
1.86
83070--83126
28
2.0
28
100
0
114
24
14
15
45
1.83
83418--83455
10
4.0
10
83
13
53
50
0
21
28
1.49
83419--83459
18
2.3
18
95
0
73
53
0
19
26
1.45
84529--84570
1
42.0
1
100
0
84
100
0
0
0
0.00
86566--88472
331
5.8
333
78
8
1606
37
16
13
32
1.87
88615--88654
19
2.1
19
90
0
62
12
50
5
32
1.62

Tables:   1

The End!