Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008072.1 Corchorus capsularis cultivar CVL-1 contig08093, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71874

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
948--989
22
1.9
22
90
9
68
21
47
21
9
1.79
4270--4441
64
2.7
64
90
5
206
15
29
33
21
1.94
4302--4441
64
2.2
64
100
0
280
14
27
33
24
1.94
4302--4471
64
2.7
64
90
1
189
15
28
31
24
1.96
5506--5556
23
2.2
24
92
3
86
47
25
13
13
1.80
5566--5617
23
2.2
23
89
3
77
48
26
9
15
1.76
8863--8930
31
2.2
31
84
7
84
48
4
14
32
1.64
8871--8936
31
2.1
32
86
5
91
46
4
18
30
1.68
19086--19127
11
3.7
11
82
17
50
57
2
0
40
1.12
39711--40020
22
14.3
22
71
9
109
37
13
16
32
1.87
39770--40195
22
19.7
22
69
6
194
38
13
15
32
1.87
39772--39998
87
2.6
88
77
7
230
37
14
16
32
1.88
40406--40562
48
3.3
48
77
5
147
33
24
22
19
1.97
53933--53980
10
4.9
10
82
10
55
41
10
6
41
1.64
55084--55110
6
4.5
6
100
0
54
33
0
18
48
1.49
69363--69389
2
13.5
2
100
0
54
48
0
0
51
1.00
69451--69483
16
2.1
16
100
0
66
24
24
6
45
1.75
71796--71865
31
2.3
31
84
0
95
18
25
25
30
1.98

Tables:   1

The End!