Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008073.1 Corchorus capsularis cultivar CVL-1 contig08094, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56720

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2428--2456
6
4.8
6
100
0
58
86
0
0
13
0.58
9041--9105
31
2.1
31
100
0
130
41
23
15
20
1.89
16960--16984
2
12.5
2
100
0
50
52
0
0
48
1.00
18197--18289
42
2.2
43
81
5
111
36
1
10
51
1.44
18372--18412
21
2.0
21
95
0
73
7
21
19
51
1.71
19142--19191
25
2.0
25
88
0
73
12
30
22
36
1.90
24220--24287
33
2.1
33
91
5
111
11
26
17
44
1.83
24264--24298
9
3.9
9
92
0
61
11
42
0
45
1.40
24331--24360
9
3.2
9
90
9
51
10
40
0
50
1.36
24330--24362
10
3.4
10
91
8
59
9
39
0
51
1.34
28139--28278
69
2.0
69
100
0
280
30
18
18
32
1.95
36140--36168
2
14.5
2
100
0
58
51
0
0
48
1.00
40348--40377
3
10.0
3
100
0
60
0
66
0
33
0.92
49317--49346
15
2.0
15
93
0
51
56
0
0
43
0.99
49895--49938
2
21.5
2
82
13
54
47
0
6
45
1.29
52116--52190
39
1.9
39
100
0
150
37
16
24
22
1.93
54204--54229
1
26.0
1
100
0
52
100
0
0
0
0.00
56431--56459
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!