genome.fa.s8075.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008075.1 Corchorus capsularis cultivar CVL-1 contig08096, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114108

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304--338	1	35.0	1	100	0	70	0	0	0	100	0.00
340--1950	669	2.4	653	81	6	1746	33	14	16	35	1.89
1953--4890	665	4.4	659	81	6	2987	34	14	15	34	1.89
1953--4888	333	8.9	331	79	5	2813	34	14	15	34	1.89
1953--4890	999	3.0	989	85	5	3733	34	14	15	34	1.89
3967--5823	933	2.0	919	94	1	3214	33	15	15	35	1.90
5166--10488	333	16.0	330	79	6	4701	33	14	16	35	1.89
10636--10742	43	2.5	43	80	3	126	32	28	19	19	1.96
12222--12568	32	10.9	32	97	0	633	34	25	8	30	1.86
12639--12881	121	2.0	123	84	1	319	41	23	20	15	1.89
16601--16668	31	2.4	26	72	21	73	38	19	17	25	1.93
16610--16687	31	2.5	31	97	0	147	41	14	17	26	1.88
18877--18916	20	2.0	20	95	0	71	57	10	15	17	1.64
23831--23878	22	2.3	20	86	10	62	39	25	16	18	1.91
23798--23900	53	1.9	53	90	0	161	35	27	20	16	1.94
23850--23948	31	3.2	31	82	4	110	33	26	22	18	1.96
32230--32349	60	2.0	60	95	0	213	34	19	12	34	1.89
45681--45723	18	2.4	18	84	0	59	60	2	32	4	1.30
50685--50741	17	3.2	17	81	13	62	75	0	22	1	0.90
50686--50737	5	10.2	5	84	12	70	76	0	21	1	0.87
50686--50742	13	4.7	12	75	16	55	77	0	21	1	0.86
50686--50742	18	3.2	18	83	11	73	77	0	21	1	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50686--50744	15	3.9	14	82	13	64	77	0	20	1	0.85
52067--52108	22	1.9	22	85	0	57	64	0	7	28	1.20
69399--69430	3	10.7	3	100	0	64	68	31	0	0	0.90
81533--81563	2	15.5	2	100	0	62	51	0	0	48	1.00
82054--82101	19	2.3	21	86	10	64	41	25	14	18	1.88
82020--82121	53	1.9	53	87	0	150	38	26	18	16	1.92
84370--84439	34	2.1	34	100	0	140	22	30	27	20	1.98
84438--84489	26	2.0	26	100	0	104	23	19	34	23	1.96
99724--99759	18	2.1	18	89	5	56	33	13	16	36	1.89
113576--113609	2	17.0	2	100	0	68	50	0	0	50	1.00
113881--113905	11	2.3	11	100	0	50	0	8	0	92	0.40

Tables:   1

The End!