Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008077.1 Corchorus capsularis cultivar CVL-1 contig08098, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57629

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4534--7280
687
4.0
686
95
1
4901
34
17
17
29
1.93
10464--11225
151
5.0
152
91
2
1203
32
15
16
36
1.90
10464--11226
301
2.5
304
91
2
1212
32
15
16
36
1.90
15133--15178
22
2.1
22
100
0
92
21
15
8
54
1.68
16101--16215
57
2.0
57
91
0
185
28
17
24
29
1.97
22138--22166
15
1.9
15
100
0
58
41
0
10
48
1.37
21914--22455
274
2.0
269
89
2
834
36
16
20
25
1.94
22410--22461
15
3.5
15
86
0
77
46
0
11
42
1.40
27506--27568
33
1.9
33
90
6
101
22
39
26
11
1.87
27670--27775
34
3.2
33
82
2
124
13
32
39
15
1.85
27814--27885
34
2.2
33
87
5
101
16
30
37
15
1.90
30064--30106
23
1.9
22
85
4
59
37
2
0
60
1.10
45002--45227
111
2.0
111
91
3
366
42
17
15
24
1.88
45740--45791
18
2.8
18
91
2
77
25
15
40
19
1.90
54652--56356
26
62.3
26
76
15
1274
28
16
21
34
1.94
54652--56356
83
20.8
79
79
13
1439
28
16
21
34
1.94
54652--56356
57
31.2
52
78
14
1462
28
16
21
34
1.94
56607--56712
31
3.4
31
89
2
167
4
13
39
42
1.65
56607--56712
16
6.8
16
87
7
155
4
13
39
42
1.65
56607--56712
47
2.3
47
88
6
153
4
13
39
42
1.65
56607--56730
47
2.6
48
83
8
139
4
14
40
40
1.67
57498--57542
16
2.9
15
87
9
63
2
15
42
40
1.59

Tables:   1

The End!