Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008079.1 Corchorus capsularis cultivar CVL-1 contig08100, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160631

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
604--680
29
2.6
30
83
8
104
18
25
15
40
1.90
872--944
29
2.5
30
80
8
96
36
16
26
20
1.93
5241--5265
2
12.5
2
100
0
50
52
0
0
48
1.00
15127--15190
21
3.1
21
77
8
69
32
17
12
37
1.87
22167--22211
22
2.1
21
83
4
54
37
4
2
55
1.32
22253--22282
12
2.5
12
100
0
60
33
10
0
56
1.32
22856--22893
11
3.5
11
89
10
51
39
0
2
57
1.12
30125--30170
19
2.4
19
85
3
56
19
2
17
60
1.46
62140--62236
33
2.9
33
87
0
149
18
37
34
10
1.85
62643--62702
28
2.1
28
93
3
102
75
13
8
3
1.16
62646--62705
14
4.1
16
74
22
60
71
15
10
3
1.25
78299--78351
17
3.1
17
84
10
72
20
20
20
37
1.94
79174--79204
14
2.2
14
94
0
53
25
58
16
0
1.38
79241--79267
6
4.5
6
100
0
54
18
37
0
44
1.50
82103--82145
20
2.2
20
91
0
68
37
18
6
37
1.78
86964--87005
1
42.0
1
95
0
66
95
0
0
4
0.28
87381--87440
31
1.9
31
96
0
111
23
11
21
43
1.85
88381--88444
21
3.1
21
75
8
78
32
23
9
34
1.87
96763--96801
3
13.0
3
83
0
51
33
5
35
25
1.78
112117--112141
13
1.9
13
100
0
50
88
0
8
4
0.64
115780--115808
2
15.0
2
92
7
51
51
0
0
48
1.00
115783--115808
13
2.0
13
100
0
52
53
0
0
46
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120640--120708
34
2.0
35
86
8
97
52
10
2
34
1.50
121585--121617
2
17.5
2
87
12
52
0
48
0
51
1.00
130450--130491
19
2.2
19
95
0
75
11
14
9
64
1.50
136891--136921
15
2.1
15
93
0
53
0
16
0
83
0.64
138007--138038
2
16.0
2
100
0
64
50
0
0
50
1.00
143968--144007
20
2.0
20
100
0
80
25
15
0
60
1.35
148662--148758
42
2.3
42
78
0
104
38
34
13
14
1.85
152028--152070
20
2.1
21
86
4
61
20
18
20
39
1.93
152058--152140
42
2.0
43
90
7
134
34
22
18
24
1.96
154347--154379
2
16.5
2
100
0
66
48
0
0
51
1.00
156629--156677
25
2.0
24
84
4
62
24
8
6
61
1.47
157052--160631
332
10.8
330
78
7
3294
33
14
15
35
1.88
158069--160631
333
7.7
329
78
7
2350
33
14
15
35
1.88
158072--160297
671
3.3
666
81
5
2686
33
14
15
35
1.89

Tables:   1

The End!