Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008085.1 Corchorus capsularis cultivar CVL-1 contig08106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 38302
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:22533 original size:16 final size:16

Alignment explanation


    Indices: 22512--22552  Score: 57
    Period size: 16  Copynumber: 2.6  Consensus size: 16

      22502 TCCCAGAAGG

                            
      22512 AAGAAAGACAAAAGAA
          1 AAGAAAGACAAAAGAA

                    *     * 
      22528 AAGAAAGAAAAAAGGA
          1 AAGAAAGACAAAAGAA

                      
      22544 AA-AAAGACA
          1 AAGAAAGACA

      22553 GCTTTTTTAG


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  15    6  0.27
  16   16  0.73

ACGTcount: A:0.76, C:0.05, G:0.20, T:0.00


Consensus pattern (16 bp):   
AAGAAAGACAAAAGAA
Done.