Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008093.1 Corchorus capsularis cultivar CVL-1 contig08114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56611

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--1106
331
3.3
328
79
5
967
34
16
14
34
1.89
3350--3424
21
3.7
21
83
7
100
37
13
17
32
1.88
4699--4763
36
1.9
32
85
14
87
15
9
13
61
1.56
11984--12008
12
2.1
12
100
0
50
44
8
0
48
1.32
31274--31312
7
5.6
7
91
8
62
25
30
0
43
1.55
33547--33582
11
3.6
10
92
7
56
2
5
0
91
0.49
38493--38521
14
2.1
14
100
0
58
55
6
6
31
1.53
45297--45323
14
1.9
14
100
0
54
0
40
7
51
1.30
48292--48356
31
2.1
31
91
0
103
24
15
18
41
1.89
54027--54057
1
31.0
1
100
0
62
100
0
0
0
0.00
54786--54879
49
1.9
49
91
4
154
54
6
20
19
1.65

Tables:   1

The End!