Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008094.1 Corchorus capsularis cultivar CVL-1 contig08115, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76872

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--52
15
3.1
15
74
25
56
35
0
11
52
1.38
191--231
21
2.0
21
85
0
55
31
2
39
26
1.70
16440--16571
65
2.0
65
100
0
264
40
16
10
31
1.83
25783--25821
15
2.6
15
87
0
60
38
17
12
30
1.88
33608--33647
2
20.5
2
85
14
57
50
2
0
47
1.14
56026--56061
3
11.3
3
88
11
54
61
0
0
38
0.96
62551--62625
31
2.4
32
81
4
89
20
28
16
36
1.93
62735--62829
31
3.1
30
89
3
127
36
24
21
17
1.94
62725--62840
31
3.8
29
78
12
99
37
23
21
18
1.94
63431--63459
2
14.5
2
100
0
58
48
0
0
51
1.00
65106--65134
1
29.0
1
100
0
58
0
0
0
100
0.00
65466--65490
2
12.5
2
100
0
50
48
0
0
52
1.00
74285--74375
45
2.0
45
97
0
173
18
15
18
47
1.83
74291--74363
23
3.2
23
66
11
60
19
15
20
45
1.86
76843--76872
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!