Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01008095.1 Corchorus capsularis cultivar CVL-1 contig08116, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6515
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Found at i:2932 original size:330 final size:331
Alignment explanation
Indices: 1960--6490 Score: 3394
Period size: 331 Copynumber: 13.9 Consensus size: 331
1950 ATTTCAATTG
* *
1960 ATAAAATCGAAATAAGATTCTAATGCTCGTAAAAACAAAACCTTGAATCCATTGTGGCTGAGATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* * * * *
2025 TGGTATGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAACCATACAAAAATATGTTGGG
66 TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTAAGATGGG
*
2090 GCC-CAGAACCGCGTTTTTAGC-AAAAAATTGTGATGGTTAGTACACGATTTCAGCTAAAATTTT
131 GCCAC-GAA-CGCGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATTTT
* * * *
2153 GCAAAAATTGACCCGAAAGATTTTTGCTCAATTTTTAGCCACAATAATCATAGAAAAATATAATT
194 GCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCATAGAAATATGTAATT
* * * *
2218 CAACA-ATAAGAATATTGAAGGG-TTTTT-CATGCTTCTAATATC-TTTTTCCCAATTTTTTATG
259 CAACATA-AAGAAGATTGAAGGGCTTTTTACA--CTTCTATTATCGTTTTT-CCATTTTTTTCTG
*
2279 AATTAATTTCTT
320 AATTAATTTCTA
* * * *
2291 ATAAAATCAAAACAAGATTCTGATGCTCGTAGAAACAAAACCTTAAATGCATTGTGGCTGAGATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* * * ** *
2356 TGATTTGATGAATAAAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTGAGCCGAG
66 TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTAAGATGGG
* * * * *
2421 GCGTAGGACCGCGTTTTTAGCAAAAAAA---T--T-G-T-G-ACACGGTTTCAGCTAAAATTATG
131 GC-CACGAACGCGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTG
*
2477 CAAAAATTGACCCGAAAGTTATTTGCTCAATTTTTAGCCACAATTATCATAGAAATATGTAATTC
195 CAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCATAGAAATATGTAATTC
* * * *
2542 AACATCAAGAAGATTGAAGGGCTTTTTACACTTCTATTATTGTATTTCCATTTTTTTCTAAATTA
260 AACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTTTTTCCATTTTTTTCTGAATTA
2607 ATTTCTA
325 ATTTCTA
*
2614 ATAAAATCGAAACAAGATTCTGATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* *
2679 TGGTTTGATGAATATAGATATTTCATGGAGTCTTGGCACCAAAAATTATACAAAACTAAGATGGG
66 TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTAAGATGGG
* *
2744 TCCACGAACGCGTTTTTAG-AAAAAAATTGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGC
131 GCCACGAACGCGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGC
* * * *
2808 AAAAATTAACCCGAAAGATATTTGCTCATTTTTTAGCCACAATTGTCAGAGAAATATGTAATTCA
196 AAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCATAGAAATATGTAATTCA
* *
2873 ACATAAAAAAGATTGAAGGGCTTTTTACACTTCTATTATCGTTTTTCCATTTTTTTCTAAATTAA
261 ACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTTTTTCCATTTTTTTCTGAATTAA
*
2938 ATTCTA
326 TTTCTA
* * * *
2944 ATAAAATCGAAACAAGATTTTAATGCTCATAAAAACAAAACCATAAATCCATTGTGTCTGAGATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* * * *
3009 TGGTATGATGAATATAGATATTTCATGGGCTCTTGGCACAAAAAATCATACAAAACTGAG-TCGG
66 TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTAAGAT-GG
* * * * * * ** * * *** * * ** * *
3073 GGCCAAGGACCCGATTTCAGCTAAAATTTTGTAAAAATTGAG-GCGAAAGATTTTTGCTCAATTT
130 GGCCACGAACGCGTTTTTAGCAAAAAAATCGTGATGGTT-AGTAC--ACGATTTCAGCTAAAATT
* * *
3137 TTAGCCACAATAATT-A--TGGAA-ATA--T--ACAA---TT---CA-AA--ATCA-AGAAGAT-
192 TT-G-CA-AA-AATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCATAGAA-ATA
** ** * * ** ** * *
3183 TG-AAGGGC--TTTTATG--CTTCTGATATCG-TTTTTCCA-TT-T-TT-T-GAATTAATTTCTA
252 TGTAA-TTCAACATAAAGAAGAT-TGA-AGGGCTTTTTACACTTCTATTATCG--TT--TTTCCA
* **** ** *
3237 ATAAAATC-GAAACAATATTCTG
310 TTTTTTTCTGAATTAAT-TTCTA
** * * * * * * * * *** *
3259 AT--GCTCGTAAAAACAAAACCTT-AAAT-C-CATTATAGCTGAGA--TT---TGGTTTGATGAA
1 ATAAAATCG---AAACAAGA--TTCTAATGCTCGTAAAAAC-AAAACCTTAAATCCATTG-TG-G
* * * ** *
3314 CATAGATATTTCATAGGCTTT--TGACATCGA-AAATCA-TACA-AAACTAAGTTGCGGC-CCAT
58 C-T-GAGA-TT--T-GG-TTTGATGA-AT--ATAGAT-ATTTCATGGACT--CTT--GGCACCA-
** ** * ** ** * * * ** *
3373 GAACGCGTTTTTAGCAAAAAATCGTGATGGGTACAC-AA-----TTTTAGCTAAAATATTGCAAA
107 -AA---AATCATA-C-AAAACT-AAGATGGGGCCACGAACGCGTTTTTAGCAAAAAAATCGTGAT
** * ** * * * ** * *
3432 AATT-G-ACCCGAAAGGTTTTTGCTCAATTTTTAGCCACAATAA-TCA-TAGAAATATATAAT--
165 GGTTAGTACACG--A--TTTCAGCTAAAATTTT-G-CA-AA-AATTGACCCGAAAGATAT-TTGC
** * * * * *** *
3491 TCAACATTAAG--A-AGA-T-TGA-AG-AGT-T-T--TTCATGC-T--TCTA-A-T-AA-CG-TT
221 TCAATTTTTAGCCACA-ATTATCATAGAAATATGTAATTCA-ACATAAAGAAGATTGAAGGGCTT
* * *** ** * *
3537 TTTCCA-TT-TTTTAT-GAATTAATTT-C-TTGTAAAATC-GAAACAAGATTCTG
284 TTTACACTTCTATTATCG--TT--TTTCCATT-T-TTTTCTGAATTAA-TTTCTA
** * *
3586 AT--GCTCGTAA-AA-A--CAAAT--TC-T-------------TAAATCCATTGTGGCTGAGATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* * *
3629 TGGTTTGATGAATATAGATATTTCATGGACTCTTGCCACCAAAAATCACACAAAACTGAA-TTGG
66 TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACT-AAGATGG
3693 GGCGC-CGGAACGCGTTTTTAGCAAAAAAATTCGTGATGGTTAGTACACGATTTCAGCTAAAATT
130 GGC-CAC-GAACGCGTTTTTAGCAAAAAAA-TCGTGATGGTTAGTACACGATTTCAGCTAAAATT
* *
3757 TTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCACAATTATCATAGAAATAGGTAA
192 TTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCATAGAAATATGTAA
* * * * *
3822 CTCAACATATAGAAGTTTGAAGGGCTTTTTATACTTCTATT-TACGTATTTCCATTTTTTTTTCT
257 TTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTAT-CGTTTTTCCA--TTTTTTTCT
3886 GAATTAATTTCTA
319 GAATTAATTTCTA
* * * * *
3899 CTAAAATCGAAACAAGATTCTAATGCTCGGAAAAACAAAACATTAAATCCATTGTGTCTGAAATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* * * * *
3964 TGGTATGATGAATATAGATATTTCATGGACCCTTGGCACCAAAAATAATATAAAACT-ATATCGA
66 TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTAAGAT-G-
* * *
4028 GGCCCAGGAACGTGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACTACACGATTTCAGCTAAA
129 GGGCCACGAACGCGTTTTTAGCAAAAAAATCGTGATGGTTAG-----TACACGATTTCAGCTAAA
* * * * * *
4093 ATTTTGCAAAAATTGACCCGAAAGGTTTTTGCTCAATTTTTTGCCACAATAATCATAGAATTATA
189 ATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCATAGAAATATG
* * * * * * * * *
4158 TAATACAACATTAAGAAGATTAAAGGACTTTTCACGCTTCTAATAACATTTTTCCATTTTTTAT-
254 TAATTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTTTTTCCATTTTTT-TC
*
4222 T-AATTAATTTCTT
318 TGAATTAATTTCTA
* *
4235 ATAAAATCGAAACAAGATTCTGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* * * * * * **
4300 TGGTTTGATGACTATAGATATTTCATGGACTCTTGGCACCGAAAATCACAAAAAATTGAGCCGGG
66 TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTAAGATGGG
* * * *
4365 GCGC-CGGAGCGCGTTTTCAGTAAAAAAATCGTGATGATTAGTACACGATTTCAGCTAAAATTTT
131 GC-CAC-GAACGCGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATTTT
* *
4429 GCAAAAA-TGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTGTCATAGAAATATGTAACT
194 GCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCATAGAAATATGTAATT
* * * * *
4493 CAACATAAAGAAGTTTGCAGGACTTTTTACACTTCTATTATCGTATTTCCATTTTTTTATGAATT
259 CAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTTTTTCCATTTTTTTCTGAATT
*
4558 AATTTCTT
324 AATTTCTA
* * * *** * *
4566 GTAAAATCGAAACAAGATTTTGATGCTCGTAAAAACAAATTGTTAAATCCCTGGTGGCTGAGATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* * * *
4631 TGGTTTGATGAATATAAATATTTCATGGACTCTTGGCACCAAAAATCACACAAAGCTGAACA-GG
66 TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACT-AAGATGG
* **
4695 GG-CACCAGAACTCGTTTTTAGTTAAAAAATCGTGATGG-T--T--A--A----A--T----TTT
130 GGCCA-C-GAACGCGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATTT
*
4742 T-CAAAAATTGACTCGAAAGATATTTGCTCAATTTTTAGCCACAATTAT-ATTAGAAATATGTAA
193 TGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCA-TAGAAATATGTAA
* * * ** *
4805 CTCAACATAAAGAAGTTTGAAGGGCTTTTTACACTTCTATTATCGTATTTATATTTTTTCCTGAA
257 TTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTTTTTCCATTTTTTTCTGAA
4870 TTAATTTCTA
322 TTAATTTCTA
* * * * ** *
4880 ATAAAATAGAAACAAGATTCTAATGCTCGGAAAAACAAAACATTAAGTCCATTGTTTCTCAGATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* * * * * *
4945 TGGTATGATGAATATAGATATTTCATGGACCCATGGCAACAAAAATCATATAAAACTATG-TCGA
66 TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTAAGAT-G-
* * * * * * *
5009 GGCCCAGGAACGCGTTTTTAAC-AAAAAATCTTGATGATTAGTACACGGTTTAAGCTAAAATTTT
129 GGGCCACGAACGCGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATTTT
* * * * *
5073 GCAAAAATTGACCCGAAAGGTTTTTGCTCAATTTTTAGCCACAATAATCATAGAATTATATAATT
194 GCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCATAGAAATATGTAATT
* * ** * * * *
5138 CAAAATTAAGAAGATTGAAGAACTTTTCACGCTCCT-TATATCAG-TTTTCCATTTTTTTTATGA
259 CAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTAT-TATC-GTTTTTCCA-TTTTTTTCTGA
*
5201 ATTAATTTCTT
321 ATTAATTTCTA
* * ** * * *
5212 ATAAAATAGAAACACGATTCCGATGCTTGTAAAAGCAAATCCTTAAATCCATTGTGGCTGAGATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* * *
5277 TGGTTTGATGAATATAGATATTTCGTGGACTCTTGGCACCAAAAATCACACAAAACTGAA-CTGG
66 TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACT-AAGAT-G
*
5341 GGTGCCA-GAACGCGCTTTTAGC--AAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATTT
129 GG-GCCACGAACGCGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATTT
* *
5403 TGTAAAAATTGACCCGAAAGATATTTGCT-AAGTTTTTAGCCACAATTATCATAGAAATAGGTAA
193 TGCAAAAATTGACCCGAAAGATATTTGCTCAA-TTTTTAGCCACAATTATCATAGAAATATGTAA
* * * * *
5467 CTCAACATAAAGAAGTTTGAAGGGCTTTTTATACTTCTATTATCGTATTTCCATTTTTTTATGAA
257 TTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTTTTTCCATTTTTTTCTGAA
*
5532 TTAATTTCTT
322 TTAATTTCTA
* * ** * * *
5542 GTAAAATCGAAACAAGATTCTGAA-GCTCGTTAAAACAAATTCTTTAATACATGGTGGCTGAGAT
1 ATAAAATCGAAACAAGATTCT-AATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGAT
* * *
5606 TTGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATAACACGAAACTAA-ACTG
65 TTGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTAAGA-TG
* *
5670 GGGCGC-CGGAACGCGTTTTTAGCAAAAAAATCATGATGGTTAGTATACGATTTCAGCTAAAATT
129 GGGC-CAC-GAACGCGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATT
** * * * *
5734 TTGCAAAAATTGACTAGAAATATATTTGCTCAATTTTTATCCAAAATTAT-ATTTGAAATATGTA
192 TTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCA-TAGAAATATGTA
* * * * *
5798 ACTCAACATAAATAAGTTTGAAGGGCTTTTTACACTTCTATTATCGTATTTCCATTTTTTTTCCG
256 ATTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTTTTTCCA-TTTTTTTCTG
5863 AATTAATTTCTA
320 AATTAATTTCTA
* * * * * *
5875 ATAAAATCGAAACAAGATTCTAATGCTAGGAAAAACAAAACATTAAACCCATTTTGTCTGAGATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* ** * * *
5940 TGGTATGAAAAATATAGATATTTCATGGACCCTTGGCACCAAAAATAATATAAAACTAAGATGGG
66 TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTAAGATGGG
* * *
6005 GTCCACGAACGCGTTTTTAGAAAAAAAATCATAATGGTTAGTACACGATTTCAGCTAAAATTTTG
131 G-CCACGAACGCGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTG
* * *
6070 CAAAAATT-ATCCCAAAAGATATTTGCTC-ATTTATAAGCCACAATTGTCATAGAAATATGTAAT
195 CAAAAATTGA-CCCGAAAGATATTTGCTCAATTT-TTAGCCACAATTATCATAGAAATATGTAAT
* * *
6133 TCAACATAAA-AAGGATTGAAGGGTTTTTTACACTTCCATTATCGTTTTTCCATTTTTTTCTGAT
258 TCAACATAAAGAA-GATTGAAGGGCTTTTTACACTTCTATTATCGTTTTTCCATTTTTTTCTGAA
* *
6197 TTAAATTATA
322 TTAATTTCTA
* * * *** **
6207 ATAAAATCGACACAAGATTTTAATGCTCATAAAAACAAAACCACGAATCCATTGTGTTTGAGATT
1 ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
* * * * * *
6272 TGGTATGATGAATATATAGATATTTCATGGACTATTGGCACAAAAAATTACACAAAACTGA-ATC
66 TGGTTTGATG-A-ATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTAAGAT-
** * * * *
6336 TTGG-TA-GTAACGTGTTTTTAGCAAAAAAATCGTGATGGTTAATACACGATTTCAACTAAAATT
128 GGGGCCACG-AACGCGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATT
* * * ** *
6399 TTGCAAAAAATTGACCCGAAATATTTTTGCTCAATTTTTAGCCACAATAATTTTAGAAATATATA
192 TTGC-AAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCATAGAAATATGTA
*
6464 ATTCAACATCAAGAAGATTGAAGGGCT
256 ATTCAACATAAAGAAGATTGAAGGGCT
6491 ATTCATGCTT
Statistics
Matches: 3383, Mismatches: 568, Indels: 496
0.76 0.13 0.11
Matches are distributed among these distances:
290 5 0.00
291 6 0.00
292 5 0.00
293 7 0.00
294 10 0.00
295 9 0.00
296 14 0.00
297 16 0.00
298 11 0.00
299 7 0.00
300 15 0.00
301 9 0.00
302 4 0.00
303 1 0.00
304 3 0.00
305 7 0.00
306 2 0.00
307 2 0.00
308 2 0.00
309 5 0.00
310 2 0.00
311 9 0.00
312 10 0.00
313 40 0.01
314 253 0.07
315 36 0.01
316 27 0.01
317 8 0.00
318 11 0.00
319 22 0.01
320 15 0.00
321 13 0.00
322 22 0.01
323 257 0.08
324 67 0.02
325 20 0.01
326 12 0.00
327 41 0.01
328 6 0.00
329 25 0.01
330 532 0.16
331 548 0.16
332 436 0.13
333 370 0.11
334 77 0.02
335 99 0.03
336 156 0.05
337 12 0.00
338 1 0.00
339 116 0.03
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (331 bp):
ATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACCTTAAATCCATTGTGGCTGAGATT
TGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATCATACAAAACTAAGATGGG
GCCACGAACGCGTTTTTAGCAAAAAAATCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGC
AAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATTATCATAGAAATATGTAATTCA
ACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTTTTTCCATTTTTTTCTGAATTAA
TTTCTA
Found at i:4599 original size:331 final size:332
Alignment explanation
Indices: 3084--6490 Score: 3802
Period size: 332 Copynumber: 10.3 Consensus size: 332
3074 GCCAAGGACC
* ** * *
3084 CGATTTCAGCTAAAATTTTGTAAAAATTGAGGCGAAAGATTTTTGCTCAATTTTTAGCCACAATA
1 CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATT
* * ** * * * ** *
3149 ATTATGGAAATATACAATTCAAAATCAAGAAGATTGAAGGGC-TTTTATGCTTCTGA-TATCGTT
66 ATCATAGAAATATGTAACTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCT-ATTATCGTA
*
3212 TTTCCA--TTTTT-TGAATTAATTTCTAATAAAATCGAAACAATATTCTGATGCTCGTAAAAACA
130 TTTCCATTTTTTTATGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAACA
* * * * *
3274 AAACCTTAAATCCATTATAGCTGAGATTTGGTTTGATGAACATAGATATTTCATAGG-CTTTTGA
195 AAACCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAT-GGACTCTTGG
* * * * *
3338 CATCGAAAATCATACAAAACT-AAGTTGCGGC-CCATGAACGCGTTTTTAGC-AAAAAATCGTGA
259 CACCAAAAATCACACAAAACTGAA-TTGGGGCGCC-GGAACGCGTTTTTAGCAAAAAAATCGTGA
3400 TGG---GTACA
322 TGGTTAGTACA
* * * * * *
3408 CAATTTTAGCTAAAATATTGCAAAAATTGACCCGAAAGGTTTTTGCTCAATTTTTAGCCACAATA
1 CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATT
* * * * * *
3473 ATCATAGAAATATATAATTCAACATTAAGAAGATTGAAGAG-TTTTT-CATGCTTCTAATAACGT
66 ATCATAGAAATATGTAACTCAACATAAAGAAGATTGAAGGGCTTTTTACA--CTTCTATTATCGT
* **
3536 TTTTCCA-TTTTTTATGAATTAATTTCTTGTAAAATCGAAACAAGATTCTGATGCTCGTAAAAAC
129 ATTTCCATTTTTTTATGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAAC
** *
3600 AAATTCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTGC
194 AAAACCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTGG
3665 CACCAAAAATCACACAAAACTGAATTGGGGCGCCGGAACGCGTTTTTAGCAAAAAAATTCGTGAT
259 CACCAAAAATCACACAAAACTGAATTGGGGCGCCGGAACGCGTTTTTAGCAAAAAAA-TCGTGAT
3730 GGTTAGTACA
323 GGTTAGTACA
*
3740 CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCACAATT
1 CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATT
* * * *
3805 ATCATAGAAATAGGTAACTCAACATATAGAAGTTTGAAGGGCTTTTTATACTTCTATT-TACGTA
66 ATCATAGAAATATGTAACTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTAT-CGTA
* * * *
3869 TTTCCATTTTTTTTTCTGAATTAATTTCTACTAAAATCGAAACAAGATTCTAATGCTCGGAAAAA
130 TTTCCA--TTTTTTTATGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAA
* * * * *
3934 CAAAACATTAAATCCATTGTGTCTGAAATTTGGTATGATGAATATAGATATTTCATGGACCCTTG
193 CAAAACCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTG
* * * * * *
3999 GCACCAAAAATAATATAAAACT-ATATCGAGGC-CCAGGAACGTGTTTTTAGCAAAAAAATCGTG
258 GCACCAAAAATCACACAAAACTGA-ATTGGGGCGCC-GGAACGCGTTTTTAGCAAAAAAATCGTG
4062 ATGGTTAGTACACTACA
321 ATGGTTAG-----TACA
* * * *
4079 CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGGTTTTTGCTCAATTTTTTGCCACAATA
1 CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATT
* * * * * * * * * * *
4144 ATCATAGAATTATATAA-TACAACATTAAGAAGATTAAAGGACTTTTCACGCTTCTAATAACATT
66 ATCATAGAAATATGTAACT-CAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTA
* *
4208 TTTCCA-TTTTTTATTAATTAATTTCTTATAAAATCGAAACAAGATTCTGATGCTCGTAAAAACA
130 TTTCCATTTTTTTATGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAACA
* *
4272 AATCCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGACTATAGATATTTCATGGACTCTTGGC
195 AAACCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTGGC
* * * *** * * * *
4337 ACCGAAAATCACAAAAAATTGAGCCGGGGCGCCGGAGCGCGTTTTCAGTAAAAAAATCGTGATGA
260 ACCAAAAATCACACAAAACTGAATTGGGGCGCCGGAACGCGTTTTTAGCAAAAAAATCGTGATGG
4402 TTAGTACA
325 TTAGTACA
4410 CGATTTCAGCTAAAATTTTGCAAAAA-TGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATT
1 CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATT
* * * *
4474 GTCATAGAAATATGTAACTCAACATAAAGAAGTTTGCAGGACTTTTTACACTTCTATTATCGTAT
66 ATCATAGAAATATGTAACTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTAT
** *
4539 TTCCATTTTTTTATGAATTAATTTCTTGTAAAATCGAAACAAGATTTTGATGCTCGTAAAAACAA
131 TTCCATTTTTTTATGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAACAA
*** * * *
4604 ATTGTTAAATCCCTGGTGGCTGAGATTTGGTTTGATGAATATAAATATTTCATGGACTCTTGGCA
196 AACCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTGGCA
* ** * * * **
4669 CCAAAAATCACACAAAGCTGAACAGGGGCACCAGAACTCGTTTTTAGTTAAAAAATCGTGATGG-
261 CCAAAAATCACACAAAACTGAATTGGGGCGCCGGAACGCGTTTTTAGCAAAAAAATCGTGATGGT
4733 T--T--A
326 TAGTACA
*
4736 --A----A--T----TTTT-CAAAAATTGACTCGAAAGATATTTGCTCAATTTTTAGCCACAATT
1 CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATT
*
4788 AT-ATTAGAAATATGTAACTCAACATAAAGAAGTTTGAAGGGCTTTTTACACTTCTATTATCGTA
66 ATCA-TAGAAATATGTAACTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTA
** ** * * *
4852 TTTATATTTTTTCCTGAATTAATTTCTAATAAAATAGAAACAAGATTCTAATGCTCGGAAAAACA
130 TTTCCATTTTTTTATGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAACA
* * ** * * * *
4917 AAACATTAAGTCCATTGTTTCTCAGATTTGGTATGATGAATATAGATATTTCATGGACCCATGGC
195 AAACCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTGGC
* * * * * *
4982 AACAAAAATCATATAAAACT--ATGTCGAGGC-CCAGGAACGCGTTTTTAAC-AAAAAATCTTGA
260 ACCAAAAATCACACAAAACTGAAT-T-GGGGCGCC-GGAACGCGTTTTTAGCAAAAAAATCGTGA
*
5043 TGATTAGTACA
322 TGGTTAGTACA
* * * * *
5054 CGGTTTAAGCTAAAATTTTGCAAAAATTGACCCGAAAGGTTTTTGCTCAATTTTTAGCCACAATA
1 CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATT
* * * * * ** * * *
5119 ATCATAGAATTATATAATTCAAAATTAAGAAGATTGAAGAACTTTTCACGCTCCT-TATATCAGT
66 ATCATAGAAATATGTAACTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTAT-TATC-GT
* * * * * *
5183 -TTTCCATTTTTTTTATGAATTAATTTCTTATAAAATAGAAACACGATTCCGATGCTTGTAAAAG
129 ATTTCCA-TTTTTTTATGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAA
* *
5247 CAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCGTGGACTCTTG
193 CAAAACCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTG
* * * *
5312 GCACCAAAAATCACACAAAACTGAACTGGGGTGCCAGAACGCGCTTTTAGC--AAAAATCGTGAT
258 GCACCAAAAATCACACAAAACTGAATTGGGGCGCCGGAACGCGTTTTTAGCAAAAAAATCGTGAT
5375 GGTTAGTACA
323 GGTTAGTACA
*
5385 CGATTTCAGCTAAAATTTTGTAAAAATTGACCCGAAAGATATTTGCT-AAGTTTTTAGCCACAAT
1 CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAA-TTTTTAGCCACAAT
* * *
5449 TATCATAGAAATAGGTAACTCAACATAAAGAAGTTTGAAGGGCTTTTTATACTTCTATTATCGTA
65 TATCATAGAAATATGTAACTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTA
** * *
5514 TTTCCATTTTTTTATGAATTAATTTCTTGTAAAATCGAAACAAGATTCTGAAGCTCGTTAAAACA
130 TTTCCATTTTTTTATGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAACA
** * * *
5579 AATTCTTTAATACATGGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTGGC
195 AAACCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTGGC
* * * * *
5644 ACCAAAAATAACACGAAACTAAACTGGGGCGCCGGAACGCGTTTTTAGCAAAAAAATCATGATGG
260 ACCAAAAATCACACAAAACTGAATTGGGGCGCCGGAACGCGTTTTTAGCAAAAAAATCGTGATGG
*
5709 TTAGTATA
325 TTAGTACA
** * * *
5717 CGATTTCAGCTAAAATTTTGCAAAAATTGACTAGAAATATATTTGCTCAATTTTTATCCAAAATT
1 CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATT
* * *
5782 AT-ATTTGAAATATGTAACTCAACATAAATAAGTTTGAAGGGCTTTTTACACTTCTATTATCGTA
66 ATCA-TAGAAATATGTAACTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTA
* * *
5846 TTTCCATTTTTTT-TCCGAATTAATTTCTAATAAAATCGAAACAAGATTCTAATGCTAGGAAAAA
130 TTTCCATTTTTTTAT--GAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAA
* * * * * ** *
5910 CAAAACATTAAACCCATTTTGTCTGAGATTTGGTATGAAAAATATAGATATTTCATGGACCCTTG
193 CAAAACCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTG
* * * * * *
5975 GCACCAAAAATAATATAAAACT-AAGATGGGGTC-CAC-GAACGCGTTTTTAGAAAAAAAATCAT
258 GCACCAAAAATCACACAAAACTGAA-TTGGGG-CGC-CGGAACGCGTTTTTAGCAAAAAAATCGT
*
6037 AATGGTTAGTACA
320 GATGGTTAGTACA
* *
6050 CGATTTCAGCTAAAATTTTGCAAAAATT-ATCCCAAAAGATATTTGCTC-ATTTATAAGCCACAA
1 CGATTTCAGCTAAAATTTTGCAAAAATTGA-CCCGAAAGATATTTGCTCAATTT-TTAGCCACAA
* * * *
6113 TTGTCATAGAAATATGTAATTCAACATAAA-AAGGATTGAAGGGTTTTTTACACTTCCATTATCG
64 TTATCATAGAAATATGTAACTCAACATAAAGAA-GATTGAAGGGCTTTTTACACTTCTATTATCG
* * * * * * * * *
6177 TTTTTCCATTTTTTTCTGATTTAAATTATAATAAAATCGACACAAGATTTTAATGCTCATAAAAA
128 TATTTCCATTTTTTTATGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAA
*** ** * *
6242 CAAAACCACGAATCCATTGTGTTTGAGATTTGGTATGATGAATATATAGATATTTCATGGACTAT
193 CAAAACCTTAAATCCATTGTGGCTGAGATTTGGTTTGATG-A-ATATAGATATTTCATGGACTCT
* * * ** * *
6307 TGGCACAAAAAATTACACAAAACTGAATCT--TG-GTAGTAACGTGTTTTTAGCAAAAAAATCGT
256 TGGCACCAAAAATCACACAAAACTGAAT-TGGGGCGCCGGAACGCGTTTTTAGCAAAAAAATCGT
*
6369 GATGGTTAATACA
320 GATGGTTAGTACA
* * *
6382 CGATTTCAACTAAAATTTTGCAAAAAATTGACCCGAAATATTTTTGCTCAATTTTTAGCCACAAT
1 CGATTTCAGCTAAAATTTTGC-AAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAAT
* ** * * *
6447 AATTTTAGAAATATATAATTCAACATCAAGAAGATTGAAGGGCT
65 TATCATAGAAATATGTAACTCAACATAAAGAAGATTGAAGGGCT
6491 ATTCATGCTT
Statistics
Matches: 2616, Mismatches: 377, Indels: 171
0.83 0.12 0.05
Matches are distributed among these distances:
312 1 0.00
313 22 0.01
314 240 0.09
316 1 0.00
318 2 0.00
320 1 0.00
324 100 0.04
325 17 0.01
326 9 0.00
327 141 0.05
328 11 0.00
329 9 0.00
330 253 0.10
331 418 0.16
332 535 0.20
333 348 0.13
334 69 0.03
335 158 0.06
336 161 0.06
337 3 0.00
338 1 0.00
339 116 0.04
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (332 bp):
CGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTTTAGCCACAATT
ATCATAGAAATATGTAACTCAACATAAAGAAGATTGAAGGGCTTTTTACACTTCTATTATCGTAT
TTCCATTTTTTTATGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGTAAAAACAA
AACCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTGGCA
CCAAAAATCACACAAAACTGAATTGGGGCGCCGGAACGCGTTTTTAGCAAAAAAATCGTGATGGT
TAGTACA
Found at i:6216 original size:665 final size:660
Alignment explanation
Indices: 4735--6495 Score: 2130
Period size: 663 Copynumber: 2.7 Consensus size: 660
4725 CGTGATGGTT
* *
4735 AAATTTTTCAAAAATTGACTCGAAAGATATTTGCTCAATTTTTAGCCACAATTAT-ATTAGAAAT
1 AAATTTTGCAAAAATTGACCCGAAAGATATTTGCTC-ATTTTTAGCCACAATTATCA-TAGAAAT
**
4799 ATGTAACTCAACATAAAGAAGTTTGAAGGGCTTTTTACACTTCTATTATCGTATTTATATTTTTT
64 ATGTAACTCAACATAAAGAAGTTTGAAGGGCTTTTTACACTTCTATTATCGTATTTCCATTTTTT
* * *
4864 CCTGAATTAATTTCTAATAAAATAGAAACAAGATTCTAATGCTCGGAAAAACAAAACATTAAGTC
129 TCTGAATTAATTTCTAATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACATTAA-TC
* * * * * * *
4929 CATTGTTTCTCAGATTTGGTATGATGAATATAGATATTTCATGGACCCATGGCAACAAAAATCAT
193 CATTGTGTCTGAGATTTGGTATGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATAAC
* * * * *
4994 ATAAAACT-ATGTCGAGGC-CCAGGAACGCGTTTTTAAC-AAAAAATCTTGATGATTAGTACACG
258 ACAAAACTAATCT-G-GGCGCC-GGAACGCGTTTTTAGCAAAAAAATCATGATGGTTAGTACACG
* * **
5056 GTTTAAGCTAAAATTTTGCAAAAATTGACCCGAAAGGTTTTTGCTCAATTTTTAGCCACAATAAT
320 ATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTGCTCAATTTTTAGCCACAATAAT
* * * * ** *
5121 CA-TAGAATTATATAATTCAAAATTAAGAAGATTGAAGAACTTTTCACGCTCCTTATATCAGTTT
385 -ATTTGAAATATATAATTCAACATAAAGAAGATTGAAGGGCTTTTCACACTCCTTATATCAGTTT
* * * * * * *
5185 TCCATTTTTTTTATGAATTAATTTCTTATAAAATAGAAACACGATTCCGATGCTTGTAAAAGCAA
449 TCCATTTTTTTTACGAATTAATTTCTAATAAAATAGAAACAAGATTCCAATGCTAGGAAAAACAA
* * * * ** * *
5250 ATCCTTAAATCCATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCGTGGACTCTTGGCA
514 AACATTAAACCCATTGTGGCTGAGATTTGGTATGAAAAATATAGATATTTCATGGACCCTTGGCA
* * * * *
5315 CCAAAAATCACACAAAACTGAACTGGGGTGCCAGAACGCGCTTTTAGCAAAAATCGTGATGGTTA
579 CCAAAAATAACACAAAACTGAAATGGGGTGCCAGAACGCGCTTTTAGAAAAAATCATAATGGTTA
5380 GTACACGATTTCAGCTA
644 GTACACGATTTCAGCTA
* *
5397 AAATTTTGTAAAAATTGACCCGAAAGATATTTGCTAAGTTTTTAGCCACAATTATCATAGAAATA
1 AAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCA-TTTTTAGCCACAATTATCATAGAAATA
* *
5462 GGTAACTCAACATAAAGAAGTTTGAAGGGCTTTTTATACTTCTATTATCGTATTTCCATTTTTTT
65 TGTAACTCAACATAAAGAAGTTTGAAGGGCTTTTTACACTTCTATTATCGTATTTCCATTTTTTT
* ** * * * *
5527 ATGAATTAATTTCTTGTAAAATCGAAACAAGATTCTGAA-GCTCGTTAAAACAAATTCTTTAATA
130 CTGAATTAATTTCTAATAAAATCGAAACAAGATTCT-AATGCTCGTAAAAACAAA-ACATTAATC
* * *
5591 CATGGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATAAC
193 CATTGTGTCTGAGATTTGGTATGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATAAC
* * *
5656 ACGAAACTAAACTGGGGCGCCGGAACGCGTTTTTAGCAAAAAAATCATGATGGTTAGTATACGAT
258 ACAAAACTAATCT-GGGCGCCGGAACGCGTTTTTAGCAAAAAAATCATGATGGTTAGTACACGAT
** * * * *
5721 TTCAGCTAAAATTTTGCAAAAATTGACTAGAAATATATTTGCTCAATTTTTATCCAAAATTATAT
322 TTCAGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTGCTCAATTTTTAGCCACAATAATAT
* * * * * *
5786 TTGAAATATGTAACTCAACATAAATAAGTTTGAAGGGCTTTTTACACTTC-TATTATC-GTATTT
387 TTGAAATATATAATTCAACATAAAGAAGATTGAAGGGCTTTTCACACTCCTTA-TATCAGT-TTT
* * *
5849 CCATTTTTTTTCCGAATTAATTTCTAATAAAATCGAAACAAGATTCTAATGCTAGGAAAAACAAA
450 CCATTTTTTTTACGAATTAATTTCTAATAAAATAGAAACAAGATTCCAATGCTAGGAAAAACAAA
* *
5914 ACATTAAACCCATTTTGTCTGAGATTTGGTATGAAAAATATAGATATTTCATGGACCCTTGGCAC
515 ACATTAAACCCATTGTGGCTGAGATTTGGTATGAAAAATATAGATATTTCATGGACCCTTGGCAC
* * *
5979 CAAAAATAATATAAAACT-AAGATGGGGT-CCACGAACGCGTTTTTAGAAAAAAAATCATAATGG
580 CAAAAATAACACAAAACTGAA-ATGGGGTGCCA-GAACGCGCTTTTAG--AAAAAATCATAATGG
6042 TTAGTACACGATTTCAGCTA
641 TTAGTACACGATTTCAGCTA
* * *
6062 AAATTTTGCAAAAATT-ATCCCAAAAGATATTTGCTCATTTATAAGCCACAATTGTCATAGAAAT
1 AAATTTTGCAAAAATTGA-CCCGAAAGATATTTGCTCATTT-TTAGCCACAATTATCATAGAAAT
* * * * *
6126 ATGTAATTCAACATAAA-AAGGATTGAAGGGTTTTTTACACTTCCATTATCGTTTTTCCATTTTT
64 ATGTAACTCAACATAAAGAA-GTTTGAAGGGCTTTTTACACTTCTATTATCGTATTTCCATTTTT
* * * * * * **
6190 TTCTGATTTAAATTATAATAAAATCGACACAAGATTTTAATGCTCATAAAAACAAAACCACGAAT
128 TTCTGAATTAATTTCTAATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAA-CATTAAT
* * *
6255 CCATTGTGTTTGAGATTTGGTATGATGAATATATAGATATTTCATGGACTATTGGCACAAAAAAT
192 CCATTGTGTCTGAGATTTGGTATGATG-A-ATATAGATATTTCATGGACTCTTGGCACCAAAAAT
* * ** * * * *
6320 TACACAAAACTGAATCT-TG-GTAGTAACGTGTTTTTAGCAAAAAAATCGTGATGGTTAATACAC
255 AACACAAAACT-AATCTGGGCGCCGGAACGCGTTTTTAGCAAAAAAATCATGATGGTTAGTACAC
*
6383 GATTTCAACTAAAATTTTGCAAAAAATTGACCCGAAATATTTTTGCTCAATTTTTAGCCACAATA
319 GATTTCAGCTAAAATTTTGC-AAAAATTGACCCGAAATATTTTTGCTCAATTTTTAGCCACAATA
* *
6448 AT-TTTAGAAATATATAATTCAACATCAAGAAGATTGAAGGGCTATTCA
383 ATATTT-GAAATATATAATTCAACATAAAGAAGATTGAAGGGCTTTTCA
6496 TGCTTCTAAT
Statistics
Matches: 929, Mismatches: 146, Indels: 44
0.83 0.13 0.04
Matches are distributed among these distances:
661 1 0.00
662 252 0.27
663 278 0.30
664 8 0.01
665 267 0.29
666 77 0.08
667 42 0.05
668 4 0.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (660 bp):
AAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCATTTTTAGCCACAATTATCATAGAAATAT
GTAACTCAACATAAAGAAGTTTGAAGGGCTTTTTACACTTCTATTATCGTATTTCCATTTTTTTC
TGAATTAATTTCTAATAAAATCGAAACAAGATTCTAATGCTCGTAAAAACAAAACATTAATCCAT
TGTGTCTGAGATTTGGTATGATGAATATAGATATTTCATGGACTCTTGGCACCAAAAATAACACA
AAACTAATCTGGGCGCCGGAACGCGTTTTTAGCAAAAAAATCATGATGGTTAGTACACGATTTCA
GCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTGCTCAATTTTTAGCCACAATAATATTTGA
AATATATAATTCAACATAAAGAAGATTGAAGGGCTTTTCACACTCCTTATATCAGTTTTCCATTT
TTTTTACGAATTAATTTCTAATAAAATAGAAACAAGATTCCAATGCTAGGAAAAACAAAACATTA
AACCCATTGTGGCTGAGATTTGGTATGAAAAATATAGATATTTCATGGACCCTTGGCACCAAAAA
TAACACAAAACTGAAATGGGGTGCCAGAACGCGCTTTTAGAAAAAATCATAATGGTTAGTACACG
ATTTCAGCTA
Done.