Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008099.1 Corchorus capsularis cultivar CVL-1 contig08120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68637

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
699--736
19
2.0
19
89
0
58
34
23
13
28
1.92
15455--15490
10
3.6
10
96
0
63
41
22
5
30
1.76
16081--16122
3
14.3
3
95
5
77
30
0
35
33
1.58
17191--17233
12
3.5
12
90
6
68
25
20
16
37
1.93
27357--27385
4
7.5
4
92
7
51
79
0
0
20
0.74
27357--27385
11
2.5
12
94
5
51
79
0
0
20
0.74
28243--28307
13
4.8
13
75
9
58
73
3
4
18
1.13
35532--35556
11
2.3
11
100
0
50
40
0
8
52
1.31
39084--39109
2
13.0
2
100
0
52
50
0
0
50
1.00
56901--57264
182
2.0
182
92
1
613
38
19
15
26
1.92
66489--66520
16
1.9
17
93
6
57
46
0
0
53
1.00

Tables:   1

The End!