Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000810.1 Corchorus capsularis cultivar CVL-1 contig00810, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1478
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29


Found at i:1467 original size:12 final size:12

Alignment explanation


    Indices: 1450--1478  Score: 58
    Period size: 12  Copynumber: 2.4  Consensus size: 12

       1440 GTTGTGGCCA

                        
       1450 GATGGCCCGTGC
          1 GATGGCCCGTGC

                        
       1462 GATGGCCCGTGC
          1 GATGGCCCGTGC

                 
       1474 GATGG
          1 GATGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.10, C:0.28, G:0.45, T:0.17


Consensus pattern (12 bp):   
GATGGCCCGTGC
Done.