Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008101.1 Corchorus capsularis cultivar CVL-1 contig08122, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90815

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2581--2743
33
4.9
33
76
18
162
13
41
31
12
1.82
2592--2743
66
2.3
66
97
2
288
12
42
32
13
1.81
2804--2887
32
2.6
32
87
7
125
11
27
44
16
1.83
4522--4557
2
18.0
2
88
0
54
0
44
5
50
1.25
7101--7137
19
1.9
19
100
0
74
16
37
13
32
1.87
18358--18438
33
2.6
31
88
9
87
16
25
27
30
1.96
18367--18438
33
2.2
33
97
2
137
13
26
29
30
1.94
22817--22852
18
2.0
18
94
0
63
22
25
33
19
1.97
27558--27634
19
4.1
18
86
8
109
36
25
0
37
1.57
27555--27634
38
2.1
38
95
0
142
36
25
0
38
1.56
39862--40094
70
3.2
70
82
10
288
37
12
0
49
1.46
39862--40100
78
3.2
77
87
7
332
37
11
0
50
1.45
41966--42005
5
8.0
5
100
0
80
60
20
20
0
1.37
50058--50099
2
21.5
2
87
4
59
45
2
2
50
1.27
56740--56792
27
1.9
28
88
3
81
22
30
16
30
1.96
58586--58845
138
1.9
138
93
0
448
38
23
11
25
1.89
63776--63878
51
2.0
51
100
0
206
31
19
15
33
1.93
66569--66602
5
6.8
5
100
0
68
17
0
0
82
0.67
67129--67396
91
2.9
92
80
10
321
34
22
17
25
1.96

Tables:   1

The End!