Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008104.1 Corchorus capsularis cultivar CVL-1 contig08125, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3567
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30


Found at i:1767 original size:27 final size:28

Alignment explanation


    Indices: 1730--1805  Score: 104
    Period size: 27  Copynumber: 2.8  Consensus size: 28

       1720 TAGGGTCGTC

                                        
       1730 CAAGGGT-ATTTTGGTCATTTTTGCAC-
          1 CAAGGGTCATTTTGGTCATTTTTGCACT

             *                      *   
       1756 CCAGGGTCATTTTGGTCATTTTTGTACT
          1 CAAGGGTCATTTTGGTCATTTTTGCACT

                         *         
       1784 CAAGGG-CATTTTAGTCATTTTT
          1 CAAGGGTCATTTTGGTCATTTTT

       1806 AGGTTCACCT


Statistics
Matches: 44,  Mismatches: 4, Indels: 3
        0.86            0.08        0.06

Matches are distributed among these distances:
  26    6  0.14
  27   33  0.75
  28    5  0.11

ACGTcount: A:0.18, C:0.16, G:0.21, T:0.45


Consensus pattern (28 bp):   
CAAGGGTCATTTTGGTCATTTTTGCACT
Done.