Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008106.1 Corchorus capsularis cultivar CVL-1 contig08127, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21962

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8813--8853
6
7.0
6
78
15
50
80
17
2
0
0.82
8813--8845
11
3.0
11
90
0
57
78
18
3
0
0.87
8882--8964
34
2.5
32
88
7
114
32
6
20
40
1.77
8884--9370
148
3.3
147
91
2
752
32
7
20
39
1.80
9076--9186
42
2.6
43
81
11
131
36
8
19
36
1.82
9145--9206
28
2.2
28
82
0
70
32
9
22
35
1.87
9155--9213
28
2.1
28
87
0
82
28
10
22
38
1.86
8883--9252
35
10.3
35
67
13
126
32
7
20
40
1.80
9293--9355
28
2.2
28
82
0
72
33
9
22
34
1.86
9224--9333
43
2.6
43
81
4
125
34
6
20
38
1.79
9303--9361
28
2.1
28
90
0
91
30
10
22
37
1.87
9349--9375
14
1.9
14
100
0
54
22
0
14
62
1.31
9502--9958
37
12.4
37
75
11
395
44
15
16
22
1.86
9504--10065
74
7.5
73
79
7
535
43
14
17
24
1.87
9501--10062
111
5.0
110
76
11
455
43
14
16
24
1.86
9995--10020
13
2.0
13
100
0
52
46
0
15
38
1.46
10232--10259
6
4.7
6
100
0
56
35
0
17
46
1.49
11107--11163
8
7.1
8
76
7
62
0
15
1
82
0.75
11101--11157
15
4.1
14
74
12
55
0
17
1
80
0.79
11101--11163
30
2.1
31
88
5
94
0
17
1
80
0.78
11509--11558
15
3.4
15
78
10
50
4
28
0
68
1.08
11806--11868
14
4.6
14
79
13
69
31
9
11
47
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11806--11868
28
2.3
28
81
15
78
31
9
11
47
1.71
11926--11969
13
3.5
13
84
15
65
0
9
6
84
0.79
11932--11969
11
3.3
11
92
7
58
0
7
7
84
0.79
19868--19914
4
11.8
4
100
0
94
51
23
0
25
1.49
20592--20620
15
1.9
15
100
0
58
27
0
6
65
1.18
20534--20819
62
4.6
62
98
0
538
35
3
9
51
1.51
20654--20682
15
1.9
15
100
0
58
27
0
6
65
1.18
20716--20744
15
1.9
15
100
0
58
27
0
6
65
1.18
20591--20748
9
18.1
9
64
28
58
35
2
9
52
1.48

Tables:   1

The End!