Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008107.1 Corchorus capsularis cultivar CVL-1 contig08128, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89833

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1837--2198
188
1.9
187
91
4
590
42
11
9
35
1.75
4229--4254
2
13.0
2
100
0
52
50
0
0
50
1.00
5827--5966
69
2.0
69
92
0
235
35
7
16
40
1.76
6533--6567
11
3.2
11
87
0
52
80
14
2
2
0.95
6682--6713
2
16.0
2
93
0
55
50
3
0
46
1.17
8838--8914
33
2.3
33
82
4
93
12
40
23
23
1.89
8861--8896
15
2.4
15
90
9
56
11
38
25
25
1.88
9400--9445
21
2.2
21
84
0
56
23
21
28
26
1.99
9471--9508
15
2.5
15
91
0
58
44
7
23
23
1.79
9498--9538
18
2.3
18
95
0
73
34
7
39
19
1.80
11354--11440
31
2.8
31
98
0
165
19
20
24
35
1.96
11354--11483
62
2.1
62
82
0
152
20
20
26
33
1.96
11433--11535
53
1.9
53
86
0
143
17
20
27
34
1.95
11509--11674
83
2.0
83
98
0
323
21
25
28
25
1.99
14060--14095
18
2.0
18
88
0
54
41
2
8
47
1.48
17331--17519
44
4.2
44
92
4
274
19
25
32
22
1.97
17331--17519
23
8.5
22
87
7
274
19
25
32
22
1.97
17582--17714
49
2.7
49
91
2
187
16
29
28
25
1.97
17635--17714
22
3.4
22
66
15
61
13
28
30
27
1.94
17602--18058
48
9.4
48
80
2
362
25
24
28
21
1.99
22481--22538
7
8.7
7
79
11
59
50
15
13
20
1.78
22485--22534
25
2.0
25
96
0
91
52
14
14
20
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22493--22527
18
1.9
18
94
0
61
54
11
14
20
1.70
29957--30010
22
2.5
22
87
0
72
42
9
14
33
1.78
30695--30725
2
16.0
2
93
6
55
51
0
0
48
1.00
31247--31295
25
2.0
25
95
0
89
48
6
10
34
1.62
35314--35338
1
25.0
1
100
0
50
0
0
0
100
0.00
42146--42226
39
2.1
39
95
0
144
43
11
13
32
1.79
54563--54750
92
2.0
96
86
5
267
45
13
18
22
1.84
60486--60550
31
2.1
31
85
0
85
27
20
13
38
1.90
64143--64316
84
2.1
85
96
1
323
35
8
21
34
1.84
69906--69933
2
14.0
2
100
0
56
50
0
0
50
1.00
70585--70636
2
26.5
2
79
11
54
46
5
1
46
1.38
75557--75627
37
1.9
37
94
0
124
36
16
8
38
1.80
78985--79010
13
2.0
13
100
0
52
53
23
15
7
1.67
79413--79458
22
2.1
22
95
0
83
41
15
23
19
1.89
81661--81706
24
1.9
24
100
0
92
36
8
19
34
1.83

Tables:   1

The End!