Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008108.1 Corchorus capsularis cultivar CVL-1 contig08129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25613

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3144--3196
26
2.0
26
100
0
106
32
0
22
45
1.53
3192--3226
18
2.0
18
94
5
63
25
0
17
57
1.40
4844--4894
3
16.7
3
91
4
84
66
1
0
31
1.03
5867--5907
20
2.1
19
86
4
55
14
9
17
58
1.62
8342--8368
3
9.0
3
100
0
54
33
0
0
66
0.92
11146--11180
17
2.1
17
89
5
54
48
20
5
25
1.71
13044--13450
74
5.5
74
87
8
539
45
8
21
24
1.78
13042--13450
39
11.0
37
86
10
515
45
8
21
24
1.78
13042--13450
113
3.7
106
84
12
479
45
8
21
24
1.78
14566--14640
28
2.7
27
78
15
82
25
21
12
41
1.87
15512--15558
15
3.1
15
85
11
53
25
4
8
61
1.43
16026--16063
18
2.1
18
100
0
76
5
34
34
26
1.79
16073--16645
40
15.4
36
84
9
538
47
7
19
24
1.76
16073--16645
38
15.3
39
85
8
614
47
7
19
24
1.76
16580--16640
18
3.2
18
66
20
52
54
3
22
19
1.59
16668--16809
32
4.3
32
85
9
189
45
5
21
28
1.74
16682--16832
68
2.2
68
89
4
225
45
6
19
28
1.75
16668--16832
32
4.9
32
80
13
156
45
6
20
27
1.75
18294--18446
76
2.0
76
90
0
243
43
13
9
33
1.76
23745--23876
36
3.7
36
81
4
167
15
33
22
28
1.94

Tables:   1

The End!