genome.fa.s8111.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008111.1 Corchorus capsularis cultivar CVL-1 contig08132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29458

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4565--4609	13	3.5	13	87	3	65	22	15	8	53	1.69
4606--4638	6	5.5	6	96	0	57	27	0	15	57	1.38
8705--8764	30	2.0	30	96	0	111	10	28	41	20	1.84
9410--9458	21	2.3	21	89	0	71	18	30	32	18	1.95
9465--9558	33	2.8	33	87	7	129	22	42	27	7	1.80
16550--16621	33	2.2	33	100	0	144	44	19	11	25	1.83
16651--16755	33	3.2	33	80	2	131	45	20	9	24	1.80
20831--20880	15	3.5	15	68	15	52	30	2	14	54	1.51
20819--20893	27	2.8	27	93	0	132	28	1	16	54	1.50
21095--21937	437	1.9	439	82	3	1056	25	13	18	43	1.86
22250--22379	69	1.9	69	88	0	197	24	10	11	53	1.67
26241--26292	7	6.4	8	77	18	54	57	1	0	40	1.10
28305--28351	13	3.5	13	72	16	51	12	25	0	61	1.31
28302--28379	27	2.8	28	84	9	81	15	23	0	61	1.33
28413--28705	21	14.8	21	66	23	113	20	20	7	51	1.71
28497--28530	14	2.3	15	90	5	52	23	14	5	55	1.61
28476--28664	35	5.1	36	83	11	229	20	19	6	53	1.67
28510--28721	22	9.5	22	72	18	145	21	19	6	52	1.68
28477--28619	71	2.0	71	94	0	250	20	20	7	51	1.71
28585--28708	21	5.8	21	77	11	126	20	19	6	53	1.67
28724--28787	15	4.4	14	74	16	58	23	15	4	56	1.58
28776--28899	35	3.5	35	85	3	149	18	25	2	54	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28882--28916	14	2.5	14	85	0	52	25	22	0	51	1.48
29035--29191	71	2.2	71	81	7	178	27	15	6	50	1.69
29140--29336	55	3.4	55	77	15	225	27	18	5	48	1.70
29139--29336	54	3.4	54	78	16	218	27	18	5	48	1.70
29144--29302	66	2.4	65	88	6	219	28	18	5	47	1.71

Tables:   1

The End!