Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008114.1 Corchorus capsularis cultivar CVL-1 contig08135, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16195

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4399--4430
14
2.3
14
94
0
55
81
9
6
3
0.97
4990--5447
167
2.7
163
81
5
517
41
15
12
30
1.85
11155--11206
22
2.3
23
83
3
61
28
11
13
46
1.78
11216--11280
23
2.9
22
79
4
67
40
15
12
32
1.84
11319--11386
22
3.1
22
82
0
82
36
14
11
36
1.83
11376--11436
23
2.7
21
80
12
68
36
14
6
42
1.72
11590--11638
20
2.5
20
96
0
89
28
20
8
42
1.80
11330--11723
22
18.3
22
66
17
105
33
15
9
40
1.80
11654--11704
21
2.4
22
87
6
79
37
11
7
43
1.71
11735--11787
22
2.4
22
87
6
72
39
11
9
39
1.74
11910--12012
22
4.7
22
74
9
84
35
19
10
33
1.86
11910--12012
44
2.3
44
80
6
111
35
19
10
33
1.86
13858--13916
30
1.9
31
89
3
93
50
3
13
32
1.58
15233--15273
18
2.2
20
86
8
59
46
14
12
26
1.80

Tables:   1

The End!