genome.fa.s8116.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008116.1 Corchorus capsularis cultivar CVL-1 contig08137, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78252

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626--773	80	1.9	80	98	0	287	28	17	12	41	1.85
8817--8915	31	3.2	31	85	0	126	18	21	27	33	1.96
8896--8937	22	1.9	22	90	0	66	21	16	21	40	1.91
8865--8967	53	1.9	53	82	0	125	17	21	24	36	1.94
9742--9779	2	19.0	2	100	0	76	50	0	0	50	1.00
19249--19297	24	2.0	24	100	0	98	20	34	16	28	1.94
23679--23758	31	2.6	31	85	0	88	18	20	26	35	1.95
23710--23810	53	1.9	53	89	0	157	16	19	26	36	1.93
24020--24045	13	2.0	13	100	0	52	53	7	7	30	1.57
25555--25590	5	7.2	5	100	0	72	38	0	0	61	0.96
31091--31159	21	3.3	21	85	0	93	10	43	21	24	1.83
41503--42979	735	2.0	735	93	1	2537	31	20	19	28	1.97
48042--48072	2	16.0	2	93	6	55	51	0	0	48	1.00
48480--48742	107	2.5	105	88	2	386	41	9	9	40	1.69
57447--57532	30	2.9	30	82	0	109	25	26	24	23	2.00
59178--59210	17	1.9	17	93	0	57	30	15	18	36	1.91
60108--60160	17	3.1	17	78	8	54	45	3	3	47	1.39
60762--60793	11	2.9	11	90	0	55	37	0	18	43	1.51
60762--60821	22	2.9	22	76	19	65	41	3	18	36	1.67
60772--60809	19	2.1	18	90	5	58	44	2	21	31	1.66
62147--62177	6	5.3	6	96	3	55	35	0	12	51	1.40
64676--64780	51	2.1	51	98	0	201	38	24	19	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74221--74250	16	1.9	15	93	6	51	70	0	26	3	1.03
76630--76693	31	2.1	30	88	2	92	35	12	29	21	1.91
76643--76707	29	2.2	31	83	5	80	40	15	24	20	1.91

Tables:   1

The End!