genome.fa.s8117.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008117.1 Corchorus capsularis cultivar CVL-1 contig08138, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30539

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4475--4532	30	1.9	30	89	0	89	25	55	10	8	1.62
4635--4716	30	2.7	30	82	0	92	24	59	7	8	1.52
4583--4675	42	2.2	42	84	0	114	24	56	2	16	1.50
4683--4759	12	6.4	12	72	11	50	25	58	10	5	1.52
4683--4737	24	2.3	23	78	9	65	25	60	12	1	1.43
4679--4759	36	2.2	36	82	0	108	24	59	9	6	1.52
4785--4831	24	2.0	24	83	8	60	25	55	8	10	1.62
4802--4849	18	2.7	18	77	6	53	29	54	10	6	1.59
4845--4968	42	3.0	42	90	0	185	20	56	7	15	1.63
4973--5154	72	2.5	72	76	5	206	24	48	8	18	1.75
4990--5097	36	3.0	36	97	0	198	25	45	8	21	1.79
5133--5190	24	2.4	24	85	0	80	24	58	3	13	1.51
5133--5199	24	2.8	23	80	8	71	23	56	5	13	1.59
5181--5220	18	2.2	18	90	0	62	25	57	10	7	1.57
5194--5323	12	10.8	12	68	3	55	28	58	5	7	1.48
5254--5323	6	11.7	6	69	6	52	34	57	2	5	1.37
5254--5323	21	3.2	22	72	10	63	34	57	2	5	1.37
5216--5349	36	3.6	39	76	11	111	28	58	4	8	1.48
11309--11352	5	8.8	5	89	0	70	79	2	2	15	0.93
23855--23886	13	2.5	13	100	0	64	43	0	0	56	0.99
24221--24340	55	2.2	55	93	0	204	44	18	14	23	1.86
24686--24754	35	2.0	35	97	0	129	31	18	17	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25484--25527	21	2.2	20	83	4	52	27	4	25	43	1.74

Tables:   1

The End!