Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008121.1 Corchorus capsularis cultivar CVL-1 contig08142, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56898

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2564--2591
14
2.0
14
100
0
56
0
7
0
92
0.37
2566--2590
13
1.9
13
100
0
50
0
4
0
96
0.24
7639--7773
72
1.9
72
100
0
270
30
14
14
40
1.86
11052--11294
126
1.9
126
99
0
477
44
14
11
28
1.81
14686--14713
2
14.0
2
100
0
56
50
0
0
50
1.00
15603--15629
2
13.5
2
100
0
54
48
0
0
51
1.00
19008--19042
11
3.2
11
83
0
52
77
17
5
0
0.96
19380--19426
20
2.3
20
81
0
58
42
23
12
21
1.87
23127--23181
2
29.0
2
75
17
55
1
45
0
52
1.11
23126--23180
12
5.1
11
77
20
62
1
43
0
54
1.10
36525--36582
7
8.7
7
90
9
79
55
15
0
29
1.41
41267--41688
212
2.0
211
98
0
819
43
11
6
38
1.67
41776--41813
17
2.4
16
86
8
51
36
0
0
63
0.95
45923--45992
27
2.6
27
84
6
88
20
17
25
37
1.94
49391--49485
29
3.4
29
66
24
85
50
6
18
24
1.70
49369--49658
55
5.3
55
93
1
467
50
7
17
24
1.71
49436--49576
26
5.2
26
63
21
74
52
7
17
23
1.68
49889--50172
22
13.3
21
77
9
236
55
4
20
19
1.61
49954--50219
7
37.7
7
66
10
76
56
3
21
19
1.58
49893--50172
42
6.6
41
81
7
267
55
4
20
19
1.61
50190--50309
64
1.9
63
84
8
163
55
2
23
19
1.55
50364--50391
14
2.0
14
100
0
56
57
7
14
21
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50536--50582
5
8.8
5
86
13
67
78
0
21
0
0.75
51668--51739
37
1.9
37
97
0
135
36
9
11
43
1.73
53634--53886
113
2.2
113
92
1
418
22
22
24
30
1.99
53843--53913
32
2.2
32
90
5
108
19
28
30
21
1.97
53730--54050
145
2.2
145
89
2
475
22
23
25
28
1.99
53585--54140
259
2.2
258
92
0
923
22
23
24
30
1.99
53875--54161
114
2.5
113
91
1
450
22
22
24
29
1.99
55325--55387
29
2.2
29
94
0
108
31
6
25
36
1.81
56785--56862
38
2.1
38
92
4
131
50
1
19
29
1.56

Tables:   1

The End!