genome.fa.s8122.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008122.1 Corchorus capsularis cultivar CVL-1 contig08143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86941

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
921--960	2	19.5	2	94	5	71	47	2	0	50	1.14
9156--9183	2	14.0	2	100	0	56	50	0	0	50	1.00
11656--11684	2	14.5	2	100	0	58	51	0	0	48	1.00
15515--15602	31	2.9	30	91	3	131	28	17	4	50	1.65
17320--17385	22	3.0	22	93	0	105	36	15	15	33	1.88
17661--17854	22	8.9	22	73	8	103	42	9	12	36	1.75
17682--17849	44	3.8	44	74	10	148	42	10	11	35	1.77
17935--17983	19	2.5	20	86	6	73	42	14	18	24	1.87
17971--18097	22	5.7	23	67	18	81	42	8	10	38	1.70
17971--18095	44	2.9	43	79	11	130	42	8	10	38	1.70
18060--18150	37	2.4	37	80	5	103	46	10	10	31	1.74
18310--18389	41	2.0	41	85	5	108	37	12	12	37	1.81
18132--18542	22	18.8	22	69	12	156	37	10	15	35	1.83
18939--19192	140	1.8	140	88	4	395	49	1	10	38	1.47
19181--19210	15	2.0	15	93	0	51	56	10	0	33	1.32
19945--19986	20	2.0	21	86	4	59	30	4	26	38	1.77
21762--21926	64	2.7	60	85	7	231	36	18	18	26	1.94
21969--22135	31	5.5	31	65	11	94	28	19	18	32	1.96
21971--22120	60	2.5	60	91	0	246	29	20	18	32	1.96
23061--23136	6	12.8	6	71	27	56	30	48	17	3	1.65
23075--23136	16	3.8	16	84	2	70	33	45	16	4	1.68
23897--24002	16	6.8	16	89	2	162	41	37	13	7	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23897--24002	31	3.4	31	89	3	160	41	37	13	7	1.72
25787--25849	28	2.2	28	83	10	83	47	9	17	25	1.77
53875--53912	1	38.0	1	100	0	76	100	0	0	0	0.00
67777--68179	210	1.9	210	84	2	540	27	24	16	32	1.96
67795--68231	210	2.1	209	80	5	479	27	25	14	32	1.95
72924--72996	33	2.2	32	81	9	85	12	32	45	9	1.74
74926--74989	20	3.3	18	75	14	58	45	1	3	50	1.27
76853--76917	33	2.0	33	84	6	87	20	15	6	58	1.58
77661--77822	31	5.4	31	72	14	140	33	17	20	27	1.95
77653--77826	60	2.9	60	89	0	269	32	17	20	29	1.95
77853--77987	31	4.4	31	73	10	107	26	20	17	35	1.95
77887--78047	60	2.7	59	85	3	214	27	20	17	34	1.95
77917--78016	29	3.4	29	67	15	78	26	21	19	34	1.96
86495--86749	110	2.3	109	88	5	379	38	10	3	47	1.55

Tables:   1

The End!