Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008124.1 Corchorus capsularis cultivar CVL-1 contig08145, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56483

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18--181
88
1.9
87
84
3
222
38
18
17
25
1.92
209--283
21
3.5
21
68
10
71
40
28
10
21
1.86
452--479
2
14.0
2
100
0
56
50
0
0
50
1.00
550--737
87
2.1
87
83
4
236
39
17
18
25
1.92
791--866
28
2.6
30
84
12
97
27
15
13
43
1.84
2145--2227
41
2.0
41
97
0
157
21
15
25
37
1.93
11163--11219
21
2.7
21
78
10
62
7
24
50
17
1.70
28539--28573
9
3.9
9
88
0
52
42
11
0
45
1.40
29333--29408
33
2.3
33
86
0
98
11
28
35
23
1.90
29611--29654
21
2.1
21
87
8
63
18
34
9
38
1.82
29852--29914
34
1.9
34
90
6
103
14
38
33
14
1.86
30005--30048
21
2.1
21
95
0
79
38
9
29
22
1.85
34890--34920
2
15.5
2
100
0
62
48
0
0
51
1.00
35604--35752
41
3.7
40
79
7
167
40
28
10
20
1.85
35604--35759
82
1.9
80
87
5
224
41
27
12
19
1.87
38790--39012
22
10.1
22
72
12
127
37
19
10
32
1.85
38769--38962
66
2.9
66
77
3
185
37
16
11
34
1.85
38908--38950
20
2.1
21
86
4
61
39
18
11
30
1.86
38836--38994
65
2.4
65
79
2
165
39
16
10
33
1.83
39148--39350
22
9.4
22
73
11
136
35
13
10
40
1.78
39143--39350
44
4.8
43
77
10
176
35
13
10
40
1.78
50467--51246
391
2.0
391
99
0
1533
38
8
14
38
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52117--52147
6
5.3
6
92
7
55
0
12
0
87
0.55

Tables:   1

The End!