Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008126.1 Corchorus capsularis cultivar CVL-1 contig08147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43772

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
461--544
41
2.0
42
95
2
152
41
4
8
45
1.55
857--894
11
3.5
11
89
10
51
39
0
2
57
1.12
3720--3754
2
17.5
2
93
0
61
48
0
0
51
1.00
10144--10195
2
26.0
2
88
0
77
44
0
5
50
1.26
15116--15296
101
1.8
100
95
1
326
37
28
9
24
1.87
15805--15855
20
2.5
21
80
6
68
27
3
13
54
1.56
16081--16140
31
1.9
31
100
0
120
41
20
6
31
1.78
22109--22371
107
2.5
104
87
4
372
39
7
9
42
1.67
25299--25357
12
5.4
11
72
13
50
20
8
5
66
1.38
25307--25346
20
2.0
20
85
0
53
20
7
7
65
1.43
26062--26094
11
3.1
11
91
4
50
30
24
0
45
1.53
30429--30533
27
3.9
27
92
0
165
17
19
23
40
1.91
31204--31239
2
18.0
2
100
0
72
50
0
0
50
1.00
33266--33599
49
6.8
49
87
4
456
38
6
18
35
1.77
34408--34662
55
4.8
51
84
8
239
51
7
16
24
1.71
34466--34662
55
3.6
55
93
0
322
51
8
16
24
1.71
34612--34739
34
3.6
36
73
12
113
50
6
15
27
1.68
35063--35328
27
10.1
26
71
17
151
53
3
24
19
1.59
35830--35878
23
2.2
21
85
7
62
10
46
24
18
1.79
38250--38282
11
3.1
11
91
4
50
30
24
0
45
1.53

Tables:   1

The End!