Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008127.1 Corchorus capsularis cultivar CVL-1 contig08148, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30850

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2175--2280
28
4.0
26
78
13
108
42
23
14
19
1.88
4566--4600
18
1.9
18
88
0
52
42
2
22
31
1.68
5934--5971
6
6.5
6
96
3
69
31
0
13
55
1.38
8623--8659
19
2.0
18
89
5
56
40
8
21
29
1.82
10384--10798
156
2.7
153
74
10
376
32
13
22
31
1.93
12218--12458
120
2.0
120
90
1
385
28
26
23
21
1.99
15223--15262
21
2.0
21
85
5
55
42
17
17
22
1.89
16881--17167
156
1.8
156
82
4
373
32
14
20
32
1.93
21734--21767
16
2.1
16
100
0
68
55
20
11
11
1.67
22179--22294
45
2.7
43
87
11
152
31
14
6
46
1.71
24162--24235
30
2.4
29
80
12
78
24
31
32
12
1.92
28912--28939
2
14.0
2
100
0
56
50
0
0
50
1.00
29840--29875
16
2.2
16
90
0
54
30
25
5
38
1.78
30025--30092
26
2.6
26
92
0
109
32
1
13
52
1.49
30049--30092
15
3.2
15
75
24
60
36
0
11
52
1.38
30102--30146
23
2.0
23
82
8
56
44
0
17
37
1.49

Tables:   1

The End!