Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008128.1 Corchorus capsularis cultivar CVL-1 contig08149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3179

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
807--872
34
1.9
34
96
0
123
27
9
25
37
1.86
811--887
34
2.3
33
88
2
109
25
9
22
42
1.82
980--1048
35
2.0
35
82
5
86
34
8
14
42
1.77
1073--1141
28
2.5
28
82
0
84
30
10
23
36
1.88
1102--1328
35
6.3
35
66
14
93
32
7
19
40
1.80
810--1372
148
3.8
148
90
1
857
31
8
20
38
1.83
1231--1289
28
2.1
28
83
0
73
28
11
23
35
1.91
1572--1870
37
8.1
36
77
5
276
42
17
16
23
1.88
1574--1864
74
3.9
74
85
3
397
42
16
16
24
1.88
1574--1870
111
2.7
112
79
6
334
42
16
16
23
1.88
2485--2652
87
1.9
87
88
0
255
26
25
11
37
1.89

Tables:   1

The End!