Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008129.1 Corchorus capsularis cultivar CVL-1 contig08150, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36525

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
334--753
214
2.0
213
98
0
806
44
8
8
38
1.65
576--646
35
2.0
36
83
8
92
43
8
2
45
1.49
804--833
6
4.8
6
95
4
51
50
0
13
36
1.42
6676--6700
2
12.5
2
100
0
50
48
0
0
52
1.00
7506--7568
20
3.3
20
69
13
69
7
15
42
33
1.76
7526--7587
17
3.5
17
68
12
52
6
12
46
33
1.68
7503--7585
37
2.2
37
97
0
157
7
14
43
34
1.73
7810--7846
19
2.0
18
89
5
56
29
5
24
40
1.77
8158--8220
26
2.4
26
81
7
74
34
20
6
38
1.78
9093--9231
73
1.9
74
89
5
219
16
21
14
47
1.82
10974--11053
41
2.0
40
85
7
108
27
11
22
38
1.88
10906--11047
67
2.1
66
79
8
144
26
11
23
38
1.88
10969--11148
94
1.9
95
85
9
247
25
11
24
39
1.88
11427--11458
16
2.0
16
100
0
64
12
25
18
43
1.85
11835--11883
16
3.1
16
77
11
64
14
10
38
36
1.80
11819--11883
32
2.1
31
97
2
121
13
9
40
36
1.77
12048--12139
16
5.7
16
77
2
103
3
11
30
54
1.53
12033--12149
32
3.6
33
87
3
166
5
11
29
53
1.59
12033--12161
16
8.0
16
72
14
79
6
12
29
51
1.63
13800--13875
31
2.5
31
93
0
125
30
10
23
35
1.89
18398--19005
304
2.0
304
99
0
1207
27
12
18
41
1.87
24686--24762
27
2.8
28
86
2
111
20
10
24
44
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25066--25122
28
2.0
28
93
0
96
26
17
3
52
1.60
28813--28856
23
1.9
23
90
0
70
77
0
13
9
0.99
30761--30832
31
2.3
31
95
0
126
16
27
11
44
1.82
31986--32042
14
4.3
13
82
10
71
36
7
14
42
1.72
32637--32696
19
2.9
20
79
18
61
50
5
11
33
1.61
32750--32792
14
3.0
14
83
10
52
81
0
18
0
0.69
32750--32804
25
2.2
25
90
6
85
81
0
18
0
0.68
33046--33080
14
2.4
14
95
4
61
85
0
14
0
0.59
33909--34321
70
5.9
70
88
1
592
20
19
22
37
1.94
34684--34778
31
3.1
31
78
13
106
23
12
10
53
1.69
34748--35017
38
7.1
38
84
4
321
27
11
14
47
1.78
34748--35025
76
3.7
76
87
2
371
28
11
13
46
1.78
34767--35017
114
2.2
114
88
1
378
28
11
13
46
1.79
35033--35111
33
2.5
32
79
6
81
21
17
16
44
1.87
34992--35111
63
1.9
63
81
3
143
24
16
14
45
1.84
35311--35363
26
2.1
25
82
10
63
24
16
16
41
1.89
35350--35526
63
2.8
63
94
0
300
23
19
15
41
1.90
35532--35741
58
3.6
57
83
7
244
24
21
16
38
1.93
35984--36060
27
2.8
28
88
2
120
19
10
24
45
1.81
36366--36422
28
2.0
28
93
0
96
26
17
3
52
1.60

Tables:   1

The End!