Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008130.1 Corchorus capsularis cultivar CVL-1 contig08151, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64702

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2572--2614
20
2.2
20
86
0
59
32
0
13
53
1.41
3224--3273
21
2.4
21
86
6
66
78
0
14
8
0.97
4206--4242
11
3.0
13
84
15
60
37
8
13
40
1.74
6894--7060
82
2.0
81
98
1
325
41
10
17
29
1.84
13000--13087
2
49.5
2
72
22
54
50
1
1
47
1.16
13000--13097
19
5.5
19
66
16
66
50
1
1
47
1.14
13582--13633
26
2.1
25
85
7
70
80
9
5
3
0.99
13433--13860
221
1.9
220
87
6
625
47
15
8
28
1.75
18542--19541
200
5.0
201
84
5
1212
34
18
12
33
1.89
18546--19541
401
2.5
394
84
5
1262
34
18
12
33
1.89
23997--24022
2
13.0
2
100
0
52
50
0
0
50
1.00
29421--29445
6
4.2
6
100
0
50
48
0
16
36
1.46
36874--36901
2
14.0
2
100
0
56
50
0
0
50
1.00
37040--37081
21
2.0
21
85
0
57
16
11
7
64
1.48
41634--41702
33
2.1
33
97
0
129
17
18
26
37
1.93
41731--41764
2
17.0
2
100
0
68
50
0
0
50
1.00
45531--45645
59
1.9
59
94
3
205
18
20
23
38
1.93
49260--49326
33
2.0
33
97
0
125
32
16
5
44
1.72
49399--49466
34
2.0
34
94
0
118
47
20
14
17
1.83
49890--50169
44
6.6
43
88
9
398
27
24
24
22
2.00
49918--50169
123
2.0
124
93
2
427
28
24
24
23
2.00
49962--50168
79
2.5
79
89
7
297
28
24
23
23
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52147--52184
14
2.7
14
84
12
51
34
7
7
50
1.61
57638--57700
22
3.0
21
86
6
65
42
3
49
4
1.39
57654--57700
22
2.2
22
92
3
78
40
4
51
4
1.41
57660--57713
22
2.5
22
93
0
90
42
3
50
3
1.38
63366--63401
18
2.0
18
100
0
72
72
11
5
11
1.28

Tables:   1

The End!