Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008131.1 Corchorus capsularis cultivar CVL-1 contig08152, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43170

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5071--5193
33
3.7
33
79
8
133
25
39
25
9
1.86
8367--8425
30
2.0
30
93
6
102
30
18
30
20
1.96
10665--10735
37
1.9
37
91
0
115
39
8
15
36
1.78
13177--13247
37
1.9
37
91
0
115
39
8
15
36
1.78
16787--16816
14
2.1
14
100
0
60
50
0
6
43
1.28
22284--22313
2
15.0
2
100
0
60
50
0
0
50
1.00
24151--24262
56
2.0
56
100
0
224
25
33
16
25
1.95
25810--25853
23
1.9
23
100
0
88
29
31
4
34
1.78
28428--28458
2
15.5
2
100
0
62
51
0
0
48
1.00
38424--38478
27
2.0
28
89
3
85
21
10
3
63
1.42
39138--39434
148
2.0
148
97
0
567
46
12
13
27
1.79

Tables:   1

The End!