Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008132.1 Corchorus capsularis cultivar CVL-1 contig08153, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44745

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3558--3585
13
2.2
13
100
0
56
14
17
14
53
1.73
10081--10105
10
2.5
10
100
0
50
0
8
0
92
0.40
10676--10705
10
3.0
10
90
0
51
50
26
0
23
1.50
10666--10705
20
2.0
21
90
5
64
50
22
0
27
1.50
11467--11516
11
4.3
12
85
10
68
12
6
6
76
1.16
11469--11516
12
4.3
11
81
10
53
12
6
4
77
1.11
12322--13053
38
19.3
38
79
10
671
28
19
17
33
1.95
12322--13056
76
9.7
76
84
5
894
28
19
17
33
1.95
12322--13052
114
6.4
114
82
6
813
28
19
17
33
1.95
27044--27127
19
4.6
17
78
14
87
8
9
3
78
1.07
27033--27076
22
1.9
23
86
9
63
4
9
6
79
1.04
27039--27136
37
2.5
39
83
8
128
9
9
5
76
1.15
28288--28330
12
3.5
12
90
6
68
34
13
23
27
1.93
29775--29810
10
3.6
10
96
0
63
30
5
22
41
1.76
31611--31658
16
3.1
16
75
6
62
41
33
14
10
1.80
34924--35012
33
2.8
31
72
13
74
33
29
14
22
1.94
36472--36542
30
2.4
30
88
4
108
19
30
12
36
1.89
36872--36954
25
3.5
24
69
20
75
40
20
3
34
1.70
36866--36958
46
2.0
46
97
0
177
41
21
3
33
1.69
41553--41634
25
3.4
25
69
19
84
41
19
2
36
1.65
41547--41639
46
2.0
46
100
0
186
41
21
2
34
1.65

Tables:   1

The End!