Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008134.1 Corchorus capsularis cultivar CVL-1 contig08155, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22675

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
272--504
116
2.0
116
97
1
441
33
19
18
28
1.95
2199--2281
39
2.2
38
91
6
134
45
7
30
16
1.74
4941--5557
97
6.4
97
87
1
851
23
28
16
31
1.96
4941--5557
49
12.7
49
82
2
726
23
28
16
31
1.96
9996--10032
14
2.8
13
92
8
65
45
8
8
37
1.63
11560--11671
37
3.1
37
72
13
106
30
27
17
24
1.97
11765--11855
38
2.4
39
88
1
130
30
21
20
26
1.98
11868--11948
38
2.2
36
93
4
135
34
20
16
28
1.94
11789--12049
96
2.7
99
88
3
361
34
18
17
29
1.94
11987--12241
74
3.4
73
75
11
223
30
19
19
30
1.96
11961--12241
113
2.5
113
88
3
397
31
19
18
31
1.95
11978--12244
38
7.1
38
75
8
242
30
19
19
31
1.96
12274--12332
15
3.7
15
80
12
73
28
22
1
47
1.61
12336--12366
15
2.1
15
93
0
53
32
22
3
41
1.70
12363--12509
47
3.1
47
91
1
240
21
28
16
33
1.95
12482--12584
47
2.2
48
79
11
115
24
23
17
34
1.96
16223--16786
48
11.7
48
83
3
641
22
28
17
31
1.96
16218--16786
97
5.9
97
87
2
662
22
28
17
31
1.96

Tables:   1

The End!