genome.fa.s8136.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008136.1 Corchorus capsularis cultivar CVL-1 contig08157, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112207

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--61	2	30.5	2	100	0	122	0	49	0	50	1.00
4098--4260	31	5.5	31	75	12	137	17	22	26	33	1.96
4149--4251	53	1.9	53	88	0	152	17	20	26	35	1.94
9602--9835	118	2.0	119	89	3	366	35	12	17	34	1.88
9879--9925	21	2.4	20	80	19	55	59	0	21	19	1.38
10614--10649	17	2.1	17	100	0	72	38	11	11	38	1.76
11046--11082	19	1.9	19	94	0	65	40	29	8	21	1.82
12170--12207	20	1.9	20	94	0	67	28	21	13	36	1.91
16927--17014	38	2.3	38	100	0	176	30	18	14	36	1.91
17237--17262	12	2.2	12	100	0	52	42	7	23	26	1.81
17788--17867	27	2.9	28	85	3	92	20	20	21	38	1.93
18412--18497	29	3.3	26	68	18	79	31	16	4	47	1.67
18402--18537	52	2.6	53	92	2	229	36	16	4	42	1.68
18429--18510	25	3.2	26	62	25	64	37	15	3	42	1.65
18452--18534	29	3.3	24	67	22	62	39	18	2	39	1.63
20990--21036	19	2.5	19	89	0	76	46	8	10	34	1.69
20861--21014	51	3.0	51	79	1	211	44	3	13	38	1.60
20889--21141	120	2.1	120	94	0	452	43	4	13	38	1.64
21009--21167	50	3.2	50	83	1	210	44	3	13	38	1.62
21025--21217	50	3.8	50	81	4	210	42	4	14	38	1.67
20932--21169	120	2.0	117	84	7	311	44	3	13	38	1.63
21009--21217	101	2.1	101	84	4	271	43	4	14	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32424--32475	24	2.1	25	82	3	61	50	32	7	9	1.64
33052--33080	13	2.3	13	94	5	51	0	13	0	86	0.58
35664--35780	60	2.0	60	98	0	225	32	32	11	23	1.90
38033--38101	25	2.6	26	78	17	79	52	1	1	44	1.19
38828--38864	1	37.0	1	94	0	65	0	2	0	97	0.18
39302--39329	13	2.2	13	100	0	56	39	0	0	60	0.97
44033--44296	107	2.5	106	87	3	372	43	9	7	40	1.64
44541--44576	15	2.4	15	100	0	72	36	33	30	0	1.58
45442--45495	21	2.6	21	74	11	56	48	1	1	48	1.23
45559--45599	20	2.0	22	85	9	59	4	39	2	53	1.35
46255--46360	36	2.9	36	94	1	176	28	20	10	40	1.85
46354--46697	37	9.2	37	80	8	286	25	24	7	42	1.81
46354--46616	107	2.4	108	84	5	343	26	26	7	39	1.83
46487--46547	19	3.3	19	64	13	54	21	32	9	36	1.86
46593--46861	41	6.7	41	86	7	358	23	18	10	47	1.80
46593--46860	81	3.4	79	87	7	357	23	18	10	47	1.80
46593--46861	122	2.3	117	87	5	371	23	18	10	47	1.80
46874--47606	37	19.5	37	83	8	770	24	19	9	45	1.81
47598--47741	41	3.5	40	91	0	207	28	21	11	38	1.88
56000--56038	19	2.1	19	85	9	53	15	12	0	71	1.14
61604--61638	15	2.4	14	86	13	52	45	0	45	8	1.34
63652--63678	10	2.7	10	100	0	54	0	7	0	92	0.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63929--64109	60	3.0	60	98	0	344	29	20	23	26	1.99
73640--73671	11	2.9	11	95	0	55	0	68	12	18	1.20
73901--73936	10	3.0	13	76	23	51	33	0	8	58	1.28
76304--77243	440	2.1	438	94	0	1619	26	13	17	42	1.86
77586--77624	1	39.0	1	86	0	51	92	2	5	0	0.46
81478--81511	17	2.0	17	100	0	68	29	23	11	35	1.90
81705--81825	65	1.9	64	94	3	217	43	10	23	22	1.84
85410--85444	2	17.5	2	93	0	61	54	0	0	45	0.99
86708--86852	71	2.0	71	100	0	290	35	21	20	22	1.96
87155--87321	82	2.0	82	97	0	316	29	5	17	47	1.70
94374--94437	23	2.8	24	77	15	73	84	1	14	0	0.70
94376--94441	33	2.0	33	85	5	89	81	1	16	0	0.76
94374--94441	36	1.9	35	85	8	93	82	1	16	0	0.75
94374--94440	14	5.2	13	78	18	61	83	1	14	0	0.72
94374--94440	6	11.3	6	79	16	52	83	1	14	0	0.72
94392--94440	10	5.1	10	82	7	50	79	0	20	0	0.73
101096--101132	19	1.9	19	88	0	56	62	8	27	2	1.37
105323--105353	2	16.0	2	93	6	55	0	0	48	51	1.00
107320--107357	2	19.0	2	84	10	51	47	5	0	47	1.24
107795--107838	15	2.8	16	75	10	54	50	0	0	50	1.00
108089--108126	19	2.0	20	85	15	53	28	5	2	63	1.30
108292--108376	22	3.9	22	78	10	93	34	9	16	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108291--108375	44	1.9	44	83	9	111	32	9	17	40	1.82
108466--108858	22	17.7	22	68	14	110	39	10	15	34	1.82
108606--108706	21	4.6	22	75	12	91	42	9	14	32	1.79
108667--108857	44	4.4	43	72	9	129	42	9	14	33	1.78
108941--109517	22	26.6	22	70	11	214	38	10	15	35	1.81
108960--109517	44	12.8	44	70	12	266	38	10	15	36	1.81
109685--109750	31	2.1	32	88	5	100	28	18	4	48	1.67
109874--109969	38	2.6	37	81	6	122	13	18	10	57	1.64
110023--110141	22	5.4	20	76	11	85	42	10	14	32	1.79
110036--110163	44	2.9	44	73	9	125	42	9	13	34	1.76
110264--110425	22	7.5	22	75	12	138	41	9	12	36	1.76
110264--110817	44	12.8	44	68	15	178	37	9	15	37	1.80
110259--110425	63	2.6	65	80	9	180	41	8	14	35	1.77
110449--110506	23	2.5	23	88	0	80	36	6	13	43	1.71
110258--110522	22	12.5	21	71	16	120	38	8	16	36	1.79
110304--110548	123	2.0	122	79	6	262	38	8	15	37	1.78
110495--110561	22	3.1	22	74	8	66	35	11	14	37	1.84
110712--110823	22	5.0	22	67	15	61	42	7	15	34	1.74
110802--110898	40	2.4	41	86	6	137	48	6	9	36	1.60
110977--111001	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1

The End!