Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008138.1 Corchorus capsularis cultivar CVL-1 contig08159, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47521

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4795--4863
29
2.3
31
90
5
106
44
10
17
27
1.80
4795--4869
31
2.5
29
89
4
105
41
9
17
32
1.81
9314--9777
226
2.0
235
92
4
775
30
10
13
46
1.76
15993--16034
21
2.0
20
86
4
57
26
21
11
40
1.88
17164--17205
21
2.0
20
86
4
57
26
21
11
40
1.88
18672--18746
30
2.5
31
80
6
91
12
29
30
28
1.92
19715--20118
48
8.6
48
82
9
347
22
27
18
30
1.98
19718--20021
144
2.1
143
85
6
402
22
27
19
30
1.98
19989--20067
37
2.2
37
95
2
142
25
24
22
27
2.00
19948--20104
85
1.8
85
88
0
242
26
25
20
28
1.99
22746--22792
24
2.0
23
83
4
58
17
29
36
17
1.92
24153--24277
33
3.7
33
81
6
153
24
40
27
8
1.82
30465--30578
33
3.5
33
79
8
108
25
41
24
8
1.83
33599--33640
21
2.0
21
90
0
66
47
2
11
38
1.53
36394--36453
21
2.9
21
97
0
111
28
6
25
40
1.80
36537--36603
5
13.4
5
87
6
82
0
0
20
79
0.74
40191--40441
130
1.9
130
96
0
466
30
12
24
32
1.92
45542--45626
27
3.1
27
98
0
161
17
42
18
21
1.89

Tables:   1

The End!