Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008142.1 Corchorus capsularis cultivar CVL-1 contig08163, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46148

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5751--5786
18
2.1
17
94
5
63
11
16
8
63
1.49
9849--9875
13
2.1
13
100
0
54
29
33
7
29
1.85
11588--11617
14
2.1
15
93
6
53
53
0
6
40
1.27
13421--13454
11
3.2
10
84
15
50
50
17
2
29
1.61
13999--14069
26
2.8
25
89
6
99
19
15
26
38
1.92
17737--17832
38
2.5
38
76
10
104
50
5
19
25
1.68
18017--18125
40
2.7
40
92
0
182
52
2
22
22
1.60
18123--18156
16
2.1
17
88
5
52
58
2
20
17
1.51
18017--18141
40
3.2
39
87
7
166
52
3
23
21
1.62
18168--18250
32
2.5
33
83
13
107
53
4
19
22
1.64
18224--18277
26
2.1
26
93
6
92
53
3
14
27
1.58
18272--18395
14
9.0
14
74
13
96
55
5
19
19
1.62
18262--18599
21
16.0
21
69
14
155
52
5
21
20
1.66
18375--18456
35
2.3
35
85
4
112
50
3
26
19
1.64
18404--18599
42
4.6
42
81
7
198
50
5
22
21
1.70
18433--18587
22
7.2
22
80
4
174
52
5
20
21
1.66
18659--18705
13
3.5
13
72
16
51
61
0
25
12
1.31
18650--18708
27
2.1
27
90
3
91
59
1
22
16
1.46
21004--21042
9
4.3
9
83
0
51
43
2
0
53
1.14
26340--26404
29
2.2
30
86
2
96
38
9
7
44
1.65
33824--33860
19
2.0
18
89
5
56
40
8
21
29
1.82
38020--38050
15
2.0
16
93
6
55
16
0
0
83
0.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38124--38157
8
4.1
8
85
7
50
23
2
14
58
1.50

Tables:   1

The End!