Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008144.1 Corchorus capsularis cultivar CVL-1 contig08165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17358

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
460--538
29
2.7
29
78
18
92
45
22
8
22
1.80
738--794
27
2.1
27
100
0
114
57
7
21
14
1.60
844--873
15
2.0
15
93
0
51
50
10
40
0
1.36
1656--1730
32
2.3
33
79
6
91
21
28
24
26
1.99
1803--1873
32
2.2
32
87
0
97
23
22
32
21
1.98
1677--2006
145
2.3
144
89
1
491
23
22
24
29
1.99
1836--2102
113
2.4
113
87
1
392
23
22
23
30
1.99
4693--4803
16
6.9
16
76
0
87
33
37
19
9
1.83
4669--4786
48
2.5
48
84
2
130
29
38
21
10
1.86
4686--4802
32
3.7
32
85
4
121
31
38
20
9
1.84
4912--4958
21
2.2
21
88
0
67
29
10
6
53
1.60
5404--5552
16
9.4
16
85
6
189
32
38
21
7
1.81
7227--7317
45
2.0
45
95
0
164
29
18
19
31
1.96
8733--8759
6
4.5
6
100
0
54
55
14
0
29
1.40
9704--9729
10
2.6
10
100
0
52
23
7
19
50
1.73
10823--10884
27
2.3
27
97
0
115
46
9
14
29
1.76
10803--10875
23
3.0
23
78
18
76
41
12
13
32
1.82
10891--10932
10
4.3
10
80
17
52
42
26
0
30
1.55
10888--10928
19
2.1
20
86
13
59
46
21
0
31
1.52
10876--10942
29
2.3
30
84
7
102
46
22
2
28
1.66
13689--13829
68
2.1
68
100
0
282
52
15
7
24
1.69
14195--14305
56
2.0
57
87
1
161
32
18
24
25
1.97

Tables:   1

The End!