Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008146.1 Corchorus capsularis cultivar CVL-1 contig08167, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35828

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
987--1077
45
2.0
45
95
0
164
31
7
17
42
1.78
1239--1317
24
3.2
24
98
1
149
27
18
8
44
1.80
2115--2185
37
1.9
37
94
0
124
38
8
16
36
1.80
3370--3431
31
2.0
32
90
3
99
40
6
19
33
1.77
12691--12729
19
2.1
18
85
4
51
30
20
5
43
1.73
13840--13875
17
2.1
18
89
5
56
33
8
8
50
1.63
14658--14705
21
2.3
21
85
0
60
10
16
50
22
1.76
16471--16513
23
1.9
23
90
4
70
23
18
13
44
1.86
19649--19740
43
2.1
43
87
0
139
38
7
17
36
1.78
19722--19762
21
2.0
21
85
0
55
41
4
14
39
1.67
19777--19829
21
2.6
21
84
3
72
47
0
13
39
1.43
19692--19823
56
2.4
56
84
3
169
40
6
15
37
1.73
19877--19943
35
1.9
35
81
0
80
40
8
13
37
1.76
20631--20677
21
2.2
22
81
11
53
46
17
6
29
1.72
21735--21805
27
2.6
27
81
0
88
19
18
26
35
1.95
27060--27098
19
2.1
18
85
4
51
30
20
5
43
1.73

Tables:   1

The End!