Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008147.1 Corchorus capsularis cultivar CVL-1 contig08168, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24718

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
782--859
39
2.0
39
92
0
129
41
12
26
19
1.87
821--983
57
2.9
57
94
0
272
43
17
23
14
1.87
1593--1685
45
2.1
45
83
0
114
44
21
17
17
1.87
1764--1891
44
2.9
45
88
3
170
49
24
16
10
1.76
1875--2056
58
3.1
58
91
3
287
45
14
23
16
1.84
2499--2902
38
10.7
38
85
3
512
29
29
23
17
1.97
2498--2902
75
5.4
75
86
1
515
29
29
22
17
1.97
2499--2902
113
3.6
113
87
2
560
29
29
23
17
1.97
3450--3508
23
2.6
23
94
0
100
25
42
16
15
1.88
3558--3636
23
3.4
23
83
0
86
22
41
18
16
1.90
3426--3637
108
2.0
108
94
0
370
23
36
22
17
1.95
3677--3739
13
4.8
14
75
24
66
26
42
14
15
1.86
3677--3768
26
3.5
26
94
2
150
28
43
15
13
1.83
6215--6261
24
2.0
24
95
0
85
36
8
12
42
1.74
6504--6774
122
2.1
129
90
7
425
17
20
12
49
1.78
8588--8866
140
2.0
140
94
0
495
22
15
22
39
1.91
18894--18960
24
2.5
26
79
18
75
47
19
7
25
1.75
19662--19782
63
1.9
63
83
9
158
9
17
13
59
1.60

Tables:   1

The End!