Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008154.1 Corchorus capsularis cultivar CVL-1 contig08175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79029

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2388--2906
66
7.7
68
85
3
443
23
19
16
41
1.90
2396--2963
66
8.5
66
82
5
429
23
19
16
39
1.92
2396--2921
131
3.9
130
81
7
477
23
19
16
40
1.91
2661--2963
131
2.3
130
83
6
344
25
21
16
36
1.93
4455--4537
39
2.1
40
90
2
132
27
20
9
42
1.83
4455--4547
39
2.3
40
87
5
118
27
20
9
41
1.83
5839--5901
14
4.8
13
77
9
65
39
4
14
41
1.67
5835--5901
27
2.5
27
83
7
75
40
4
14
40
1.67
8330--8772
54
8.2
54
83
1
523
28
15
20
35
1.94
8330--8772
107
4.1
107
83
2
521
28
15
20
35
1.94
8360--8799
161
2.7
161
88
2
625
27
15
21
35
1.93
8966--9194
91
2.5
89
88
4
332
26
15
25
32
1.95
9178--9457
35
8.0
35
91
2
438
25
17
26
31
1.97
12578--13141
66
8.4
66
80
6
453
23
19
16
40
1.91
34025--34059
18
1.9
18
94
0
61
71
11
0
17
1.14
34232--34281
21
2.3
22
80
13
59
30
6
18
46
1.73
39237--39265
2
14.5
2
100
0
58
51
0
0
48
1.00
41482--41558
39
2.0
39
84
0
100
20
29
32
16
1.95
41236--41634
118
3.4
117
80
4
381
23
27
29
20
1.98
43692--43744
26
2.0
27
88
3
81
50
3
3
41
1.38
43844--43977
16
8.4
16
70
12
96
32
36
20
10
1.87
44807--44848
21
2.0
22
85
4
59
23
4
4
66
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44900--44949
23
2.3
21
83
10
64
42
14
14
30
1.84
44998--45088
22
4.1
22
84
2
101
39
13
7
39
1.73
45050--45113
25
2.6
25
87
4
87
39
14
6
40
1.71
44743--45259
22
23.7
22
67
16
96
35
14
9
40
1.78
45349--45384
11
3.2
11
88
4
54
0
2
16
80
0.83
46153--46183
11
2.7
11
95
5
53
83
0
9
6
0.79
46590--46668
34
2.3
34
93
4
133
36
17
10
35
1.84
46657--46850
44
4.4
44
73
10
148
34
13
9
42
1.77
46657--46926
22
12.5
22
69
13
132
33
14
9
42
1.78
47095--47159
30
2.1
31
85
2
87
53
3
15
27
1.56
47340--47405
16
4.2
16
78
1
53
39
37
15
7
1.75
47697--47750
20
2.7
21
82
8
67
64
0
35
0
0.94
51289--51336
24
2.0
24
100
0
96
33
8
16
41
1.78
56018--56061
2
22.0
2
100
0
88
0
50
0
50
1.00
58889--58940
21
2.5
21
74
0
50
32
7
25
34
1.84
64813--64846
10
3.4
10
87
0
50
76
11
2
8
1.12

Tables:   1

The End!